View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_5 (Length: 423)
Name: NF2555_low_5
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 224 - 406
Target Start/End: Original strand, 39928428 - 39928609
Alignment:
| Q |
224 |
taatgagattcattatcatattattttgggaataatgaattagacaaaattcttccaccaccaccaccttcctccccttgtagatctctacnnnnnnntt |
323 |
Q |
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| T |
39928428 |
taatgagat-cattatcatattattttgggactaatgaataagacaaaattcttccaccaccaccaccttcctccccttgtagatctctacaaaaaaatt |
39928526 |
T |
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| Q |
324 |
cttgtgataatgtgatgccatggtgttaactgttacatgaaatttgttcttatgcacgagtaattattcaacaactatatgat |
406 |
Q |
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| T |
39928527 |
cttgtgataatgtgatgccatggtgttaactgttacatgaaatttgttcttatgcacgagtaattattcaacaactatatgat |
39928609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 39928220 - 39928356
Alignment:
| Q |
16 |
ataatgaaaagaatttagagcattccgagatgattccaaagattgtcacaatcatgacatgatgattatggagattgaataagatggtgttgaagttata |
115 |
Q |
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| T |
39928220 |
ataatgaaaagaatttagagcattccgaaatgattccaaagattgtcaaaatcatgacatgatgattatggagattgaataagatggtgttgaagttata |
39928319 |
T |
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| Q |
116 |
agagggactagaatgttgaactagaagtctattaggc |
152 |
Q |
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| T |
39928320 |
agagggactagattgttgaactagaagtctattaggc |
39928356 |
T |
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