View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_7 (Length: 408)
Name: NF2555_low_7
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_7 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 175929 - 176306
Alignment:
| Q |
19 |
caatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaatatttcaaaatgaaatttacaaaactcaagttaaggctcacactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |
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| T |
175929 |
caatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaat---tcaaaatgatgtttacaaaactcaagttaaggttcacactt |
176025 |
T |
|
| Q |
119 |
taggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176026 |
taggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattg |
176125 |
T |
|
| Q |
219 |
ggccattgaagatcaaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176126 |
ggccattgaagatcaaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgag |
176225 |
T |
|
| Q |
319 |
tcgtatcgggagatttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176226 |
tcgtatcgggagatttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgc |
176306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 7565106 - 7564960
Alignment:
| Q |
93 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
192 |
Q |
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||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| || || |||| |||| ||||| |||||| |
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| T |
7565106 |
caaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttggg |
7565007 |
T |
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| Q |
193 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaaaataa |
239 |
Q |
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||||||||||||||| | ||||||||| ||| |||||||| |||| |
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| T |
7565006 |
aaatttgtaagtggcgccattcattgggtcataaaagatcaagataa |
7564960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 1471278 - 1471188
Alignment:
| Q |
93 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaaggg |
183 |
Q |
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|||||||| |||||||| ||| |||||||| | ||| | |||||||| ||||| |||||||||||| || ||||||||| |||||||||| |
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| T |
1471278 |
caaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttcccttctcagctcatgggtcaacccgaaggg |
1471188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 1459734 - 1459628
Alignment:
| Q |
291 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
384 |
Q |
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||||||||||||| |||||||||| ||||| |||| ||||||| ||||| |||||||| || |||||||||||||| ||||||||||||| | |
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| T |
1459734 |
cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat |
1459635 |
T |
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| Q |
385 |
agggatt |
391 |
Q |
| |
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||||||| |
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| T |
1459634 |
agggatt |
1459628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 1471116 - 1471010
Alignment:
| Q |
291 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
384 |
Q |
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||||||||||||| |||||||||| ||||| |||| ||||||| ||||| ||||||| | || ||||||| |||||| ||||||||||||||| |
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| T |
1471116 |
cattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttct |
1471017 |
T |
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| Q |
385 |
agggatt |
391 |
Q |
| |
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||||||| |
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| T |
1471016 |
agggatt |
1471010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 55419478 - 55419619
Alignment:
| Q |
93 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
192 |
Q |
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|||||||||||||| |||||| |||||||| ||||||| ||||| |||||| |||||||||||||| || ||| |||| | ||||||| | | || |
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| T |
55419478 |
caaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttcccttctgaaatcacgggtttgcccgaagagtgtccgggg |
55419577 |
T |
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| Q |
193 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaa |
234 |
Q |
| |
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|||||||||||||||| | || |||||||||| ||||||||| |
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| T |
55419578 |
aaatttgtaagtggcaccattaattgggccatagaagatcaa |
55419619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 3926760 - 3926898
Alignment:
| Q |
98 |
ctcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatt |
197 |
Q |
| |
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||||||||| || ||| ||| |||| ||||| | |||||| ||||||||| |||||||||| | |||||||| ||||| | ||| ||||||| ||||| |
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| T |
3926760 |
ctcaagttagggttcatactctaggtaccaatttttggaggaggattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatt |
3926859 |
T |
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| Q |
198 |
tgtaagtggcagcgttcattgggccattgaagatcaaaa |
236 |
Q |
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||||||||||| || |||||||||| ||| ||||||| |
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| T |
3926860 |
tgtaagtggcacaattaattgggccatagaaaatcaaaa |
3926898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 1421520 - 1421453
Alignment:
| Q |
90 |
ttacaaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
158 |
Q |
| |
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|||||||||||||||| | | ||| ||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
1421520 |
ttacaaaactcaagttgaagttcatacttt-ggcaccaactcttggagaaggattaaggacttcccttc |
1421453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 3926917 - 3926979
Alignment:
| Q |
291 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct |
353 |
Q |
| |
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||||||||||||| |||||||||| ||||| |||| |||||||| | |||||||| |||||| |
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| T |
3926917 |
cattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtct |
3926979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 40724 - 40659
Alignment:
| Q |
93 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
158 |
Q |
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||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
40724 |
caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattgaagacttcccttc |
40659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 24233753 - 24233688
Alignment:
| Q |
93 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
158 |
Q |
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||||||||||||||| | ||| || ||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
24233753 |
caaaactcaagttaaagttcatacattaggtaccgactcttggagaaggattaaggacttcccttc |
24233688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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