View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_8 (Length: 380)
Name: NF2555_low_8
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 41503387 - 41503034
Alignment:
| Q |
11 |
aatgaagctgttcatcaaactcttgtagtttctgccagcactcagccacaaagcgaagggagcaaagacgctcaagatgcatcatctggtatggaaattg |
110 |
Q |
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| T |
41503387 |
aatgaagctgttcatcaaactcttggagtttctgccagcactcagccacaaagcaaagggagcaaggacgctcaaggtgcatcatctggtatggaaattg |
41503288 |
T |
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| Q |
111 |
tgcatgcatctcttattataataaagatatgcaatttttaaattactttagaaatattgaatttaatatgcgtcagattgctactttataaagatatgga |
210 |
Q |
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| T |
41503287 |
tgcatgcatctcttattataataaagatatgcaatttttgaattactttagaaatattgaatttaatatgcgtcagattgctactttataaagatatgga |
41503188 |
T |
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| Q |
211 |
gtcatgattttcctgttatattaaaggcaaagagtaggaaatgtgttatagtttctttgagctggcaaggctacgattgaactggaccacatcgaaatcc |
310 |
Q |
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| T |
41503187 |
gtcatgattttcctgttatattaaaggcaaagagtaggaaatgtgttatagtttctttgagctggcgaggctacgattgaactggaccagatcgaaatcc |
41503088 |
T |
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| Q |
311 |
ctgtaatcggtcatcataatttgcagttagagtatgccataactaacataaatt |
364 |
Q |
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| T |
41503087 |
ctgtaatcggtcatcataatttgcagttagagtatgccataactaacagaaatt |
41503034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 364
Target Start/End: Complemental strand, 41518074 - 41517919
Alignment:
| Q |
215 |
tgattttcctgttatattaaaggcaaagagtaggaaatgtgttatagtttctttgagctggcaaggctac----gattgaactggaccacatcgaaatcc |
310 |
Q |
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| T |
41518074 |
tgattttcctgttttattaaatccaaagagtaggaaatgtgttatagtttttttgagttggtgaggctactagtgattaaactggaccacaatgaaatac |
41517975 |
T |
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| Q |
311 |
ctgtaatcggtcatcataattt--gcagttagagtatgccataactaacataaatt |
364 |
Q |
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| T |
41517974 |
ctataattagtcatcataatttgcgcggttatagtatgccataactaacaaaaatt |
41517919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 41499197 - 41499084
Alignment:
| Q |
77 |
gacgctcaagatgcatcatctggtatggaaattgtgcatgcatctcttattataataaagatatgcaatttttaaat--tactttagaaatattgaattt |
174 |
Q |
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| T |
41499197 |
gacgctcatggtgcatcatcaggtatagaaattatgcttgcatctcttattcctagaagtatatgaaatttttgaatgctactttagaaatattgaattt |
41499098 |
T |
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| Q |
175 |
aatatgcgtcagat |
188 |
Q |
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| T |
41499097 |
aatatatgtcagat |
41499084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 41688194 - 41688253
Alignment:
| Q |
70 |
gagcaaagacgctcaagatgcatcatctggtatggaaattgtgcatgcatctcttattat |
129 |
Q |
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| T |
41688194 |
gagcaaggatgctcaaggtgcatcatctggtatgaaatttctgcatgcatatcttattat |
41688253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 41514822 - 41514746
Alignment:
| Q |
100 |
tatggaaattgtgcatgcatctcttattataataaagatatgcaatttttaa-attactttagaaatattgaattta |
175 |
Q |
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| T |
41514822 |
tatggaaactatgaatgcatctcttattcctataaagatatgcattttttaatgttacttgataaatattgaattta |
41514746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 41523773 - 41523697
Alignment:
| Q |
100 |
tatggaaattgtgcatgcatctcttattataataaagatatgcaatttttaa-attactttagaaatattgaattta |
175 |
Q |
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|||||||||| ||||||||| | ||||| ||||||||||||| ||||||| |||||| | |||||||||||||| |
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| T |
41523773 |
tatggaaattatgcatgcatattttattcctataaagatatgcattttttaatgttacttgataaatattgaattta |
41523697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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