View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2555_low_9 (Length: 336)

Name: NF2555_low_9
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2555_low_9
NF2555_low_9
[»] chr3 (1 HSPs)
chr3 (148-332)||(1310350-1310534)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-96)||(9147-9239)
[»] chr7 (1 HSPs)
chr7 (1-96)||(16420435-16420527)
[»] chr8 (1 HSPs)
chr8 (47-96)||(5538238-5538287)
[»] chr6 (2 HSPs)
chr6 (47-96)||(3508678-3508727)
chr6 (62-96)||(34518725-34518759)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 1310350 - 1310534
Alignment:
Q  148 caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaacttcatagctattattattagaccaaaactattcctt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  1310350 caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaatttcataactattattattagaccaaaactattcctt 1310449  T
Q  248 tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaaaattgatttattctaagtgtagatttctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1310450 tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaacattgatttattctaagtgtagatttctt 1310534  T

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Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9147 - 9239
Alignment:
Q  1 ataagttagtgggagaattattagcaaccggttcccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 96  Q
    |||||||||||||||||||||||| ||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9147 ataagttagtgggagaattattagtaaccggttcctattcttt---ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 9239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16420435 - 16420527
Alignment:
Q  1 ataagttagtgggagaattattagcaaccggttcccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 96  Q
    |||||||||||||||||||||||| ||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420435 ataagttagtgggagaattattagtaaccggttcctattcttt---ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 16420527  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 5538287 - 5538238
Alignment:
Q  47 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538287 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 5538238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 3508678 - 3508727
Alignment:
Q  47 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508678 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 3508727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 34518759 - 34518725
Alignment:
Q  62 ttctatactttgaagaacaaaaacaaaatacatag 96  Q
    |||||||||||||||||||||| ||||||||||||    
T  34518759 ttctatactttgaagaacaaaatcaaaatacatag 34518725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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