View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_12 (Length: 449)
Name: NF2557_high_12
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 52807176 - 52807619
Alignment:
| Q |
1 |
cttcacaaaccgattccatcctctagtgaacacatagctctggctgctcttccaatagcaatatcgaaacttccacaatcgcatgagtttgtcataaaac |
100 |
Q |
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| T |
52807176 |
cttcacaaaccgattccatcctctagtgaacacatagctctggctgctcttccaatagcaatatcgaaacttccacaatcgcatgagtttgtcataaaac |
52807275 |
T |
|
| Q |
101 |
acaacttccacgtcattgccacaaaccaaaggaaaataggtaactgcatgttttttcgggacgacaagcctattgagtttaccaacatcacttggtgtta |
200 |
Q |
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| T |
52807276 |
acaacttccacgtcattgccacaaaccaaaggaaaataggtaactgcatgttttttcgggacgacaagcctattgagtttaccaacatcacttggtgtta |
52807375 |
T |
|
| Q |
201 |
attctttttgaaaaagtagttgtgtgcaagaaaattgttcctcacccttcacccctataacaacaccttctttgcctgcaccttgg---ctttcattatt |
297 |
Q |
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| T |
52807376 |
attctttttgaaaaagtagttgtgtgcaagaaaattgttcctcatccttcacccctataacaacaccttctttgcctgcaccttggcgcctttcattatt |
52807475 |
T |
|
| Q |
298 |
tctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcatgatcataattgtttccatgttatattgactttgaaacataggttcttca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
52807476 |
tctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcatgatcataattgtttccatgctatattgactttgaaacataggttcttga |
52807575 |
T |
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| Q |
398 |
actgtttggttattccatgcaaagtttctatggctttctctgct |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807576 |
actgtttggttattccatgcaaagtttctatggctttctctgct |
52807619 |
T |
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