View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_14 (Length: 431)
Name: NF2557_high_14
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 38415719 - 38415519
Alignment:
| Q |
18 |
catgaaattgtaatacgcgattgataagagaaaataataacctaattagacaaaggggaatnnnnnnnn-tgagatcttaacaatcgaaatccaatgaaa |
116 |
Q |
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| T |
38415719 |
catgaaattgtaatacgcgattgataagagaaaataataacctaattagacaaaggggaataaaaaaaaatgagatcttaacaatcgaaatccaatgaaa |
38415620 |
T |
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| Q |
117 |
aaactagttagtttaacaaatcttttttgtttcaaatagaggaattgagaatcggataaaacacaaaatttgttaagatcccaatgttaaagtttatgac |
216 |
Q |
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| T |
38415619 |
aaactagttagtttaacaaatcttttttgtttcaaatagaggaattgagaatcggataaaatacaaaatttgttaagatcccaatgttaaagtttatgac |
38415520 |
T |
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| Q |
217 |
g |
217 |
Q |
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| T |
38415519 |
g |
38415519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 297 - 406
Target Start/End: Complemental strand, 38415439 - 38415330
Alignment:
| Q |
297 |
ccaatttggatttggatgcgaggcgagaagcgagtgccatggttgatgatgatgatgagctttctctgtaacgcgagttagggttttctttctctttgtt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38415439 |
ccaatttggatttggatgcgaggcgagaagcgagtgccatggttgatgatgatgatgagctttctctgtaacgcgagttagggttttctttctctttgtt |
38415340 |
T |
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| Q |
397 |
tgtgatgctg |
406 |
Q |
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| T |
38415339 |
tgtgatgctg |
38415330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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