View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_15 (Length: 420)
Name: NF2557_high_15
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 29 - 404
Target Start/End: Complemental strand, 32911247 - 32910872
Alignment:
| Q |
29 |
aaagaaatacagaaatttaagtagagtgaaacctagagtttgtcatatagctttctatcactaattgggagttgcccgttcttacttacattccacgcaa |
128 |
Q |
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| T |
32911247 |
aaagaaatacagaaatttaagtagagtgaaacctagagtttgtcatatagctttctatcactaattgggagttgccagttcttacttacattccacgcaa |
32911148 |
T |
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| Q |
129 |
tcttcaagtggcaactctctttggttgtcaattgtattttgacaattgaagtgcattgcatattattaattaccacatcttcaacactagagaacactta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
32911147 |
tcttcaagtggcaactctctttggttgtcaattgtattttgacaattgaagtgcattgcatattattaattaccacgtcttcaacacaagagaacactta |
32911048 |
T |
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| Q |
229 |
aaacattaattgtcacgtttgtttacaagaaaactatttatataacctttgtccattcgtactcaaaactagcttgacagccttcaacaagactctcgct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911047 |
aaacattaattgtcacgtttgtttacaagaaaactatttatataacctttgtccattcgtactcaaaactagcttgacagccttcaacaagactctcgct |
32910948 |
T |
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| Q |
329 |
ctttatcatttttcttttcaaactggccatatataattgacattcaatatctacacttgttaaagaagtataatat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910947 |
ctttatcatttttcttttcaaactggccatatataattgacattcaatatctacacttgttaaagaagtataatat |
32910872 |
T |
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