View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_18 (Length: 401)
Name: NF2557_high_18
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 36676783 - 36677156
Alignment:
| Q |
19 |
aaattcgctcacatttgtgattgttcgtaactcttgtttgtttttgtcaacataaaatttacaccaacctcaacgactaaatcaatcttatatctcctac |
118 |
Q |
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| T |
36676783 |
aaattcgctcacatttgtgattgttcgtaactcttgtttgtttttgtcaacataaaatttacaccaacctcaacgactaaatcaatcttatatctcctac |
36676882 |
T |
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| Q |
119 |
aaatattaaacataaaa-aataaaagtaatccaaccaattttcaatcttagcacatagaaattaaccctctccatttctaaatatttcccataagcacac |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676883 |
aaatattaaacataaaaaaataaaagtaatccaaccaattttcaatcttagcacatggaaattaaccctctccatttctaaatatttcccataagcacac |
36676982 |
T |
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| Q |
218 |
cccataattatccatactcttctttgatattgaattgttggagattgactgtatagatgcttcttttcctttgtttttctaatgtaaggaagagtttttg |
317 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676983 |
cccataattatccataattttctttgatattgaattgttggagattgactgtatagatgcttcttttcctttgtttttctaatgtaaggaagagtttttg |
36677082 |
T |
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| Q |
318 |
ttttggtgggggtgtagtatgccaaagctttattttgctgactttttatccatccatctacgtgcatgcctttg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36677083 |
ttttggtgggggtgtagtatgccaaagctttattttgctgactttttatccatccatctacgtgcatgcctttg |
36677156 |
T |
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