View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_19 (Length: 378)
Name: NF2557_high_19
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 49584070 - 49584428
Alignment:
| Q |
1 |
tgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagaactgagcaacatcat |
100 |
Q |
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| T |
49584070 |
tgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagtactgagcaacatcat |
49584169 |
T |
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| Q |
101 |
cttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaagaagtgaatcctc |
200 |
Q |
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| T |
49584170 |
cttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaagaagtgaatcctc |
49584269 |
T |
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| Q |
201 |
atcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaa |
300 |
Q |
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| T |
49584270 |
atcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaa |
49584369 |
T |
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| Q |
301 |
ggagcatcagaaccaacactgttgttggtttcatcatctaattcagatagcactccagc |
359 |
Q |
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| T |
49584370 |
ggagcatcagaaccaacactgttgttggtttcatcatctaattcagatagcactccagc |
49584428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 11698339 - 11698415
Alignment:
| Q |
4 |
tgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaag |
80 |
Q |
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| T |
11698339 |
tgtttgcaaaaaccatgatagtacttggtaaacatttcaggtggaagaaaagtagggacacatttgaaattctcaag |
11698415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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