View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_2 (Length: 677)
Name: NF2557_high_2
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 34274044 - 34273706
Alignment:
| Q |
18 |
cctcgttgtatgtttctatatttggaaaatgacataaaatccat--tgtatcgtttggcttttgctgccaagaaaaatattcaattgattcaatgacata |
115 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274044 |
cctcattgtatgtttctatatctggaaaatgacataaaatccatattgtatcgtttggcttttgctgccaagaaaaatattcaattgattcaatgacata |
34273945 |
T |
|
| Q |
116 |
tggcctagcagtgtatgtaaatgcaaacctaaccatatgtctaagcattagtatatacatgtgatttaattcaaattccttagatgaaaagttgatgtct |
215 |
Q |
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| T |
34273944 |
tgacctagcagtgtatgtaaatgcaaacctaaccatatgtctaagcattagtatatacacgtgatttaattcaaattccttagatgaaaagttgatgtct |
34273845 |
T |
|
| Q |
216 |
tgccctttctaaataaaaaattcatttttaaattacacgtcagaaaaagcatcaagaacataattaaaaactaaagacataagaataacagattatatat |
315 |
Q |
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||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34273844 |
tgcactttctaaataaaaaatttattttcaaattacacgtcagaaaaagcattaagaacataattaaaaaccaaagacataagaataacagattatatat |
34273745 |
T |
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| Q |
316 |
aatcactcgatcaagagtattacattgtgttcctatcta |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34273744 |
aatcactcgatcaagagtattacattgtgttcctatcta |
34273706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 353 - 674
Target Start/End: Complemental strand, 34273676 - 34273346
Alignment:
| Q |
353 |
tacaaatatgaagattggagaaggaagaacatctaaaagcttgaatccaagctccaaatggcttccaatggtgaagaacaacttctccttatgtttctcc |
452 |
Q |
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| T |
34273676 |
tacaaatatgaagattggagaaggaagaacatctaaaagcttgaatccaagctccaaatggcttccaatggtgaagaacaacttctccttatgtttctcc |
34273577 |
T |
|
| Q |
453 |
ctctaaagggagcctaggtatgtgtacaatgataaataattcttatttacaagtctatttataagtgacagaaaattagtgcagattcattttatgattt |
552 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34273576 |
ctctaaagggagcttaggtatgtgtacaatgataaataattcttatttacaagtctatttataagtgacagaaaattagtgcagtttcatttgatgattt |
34273477 |
T |
|
| Q |
553 |
cttgctcgatcaacgaatccagatttcttcagatggaggaaaatgtcaacccgtctttgctaggtgaaatgttgctc---------tatgctcttgcttc |
643 |
Q |
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| T |
34273476 |
cttgctcgatcaacgaatccaggtttcttcagatggaggaaaatgtcaaccagtctttgctaggtgaaatgttgctcgttagttaatatgctcttgcttc |
34273377 |
T |
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| Q |
644 |
ctccctggaactcctcgctttcatctcactc |
674 |
Q |
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||||||||||||||||||||||| ||||||| |
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| T |
34273376 |
ctccctggaactcctcgctttcagctcactc |
34273346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 32460240 - 32460155
Alignment:
| Q |
193 |
ccttagatgaaaagttgatgtcttgccctttctaaataaaaaattcatttttaaattacacgtcagaaaaagcatcaagaacataa |
278 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||| |||| ||||||| |||| || ||| |||||| ||| |||||||||| |
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| T |
32460240 |
ccttagataaaaagttgatgtcttgcactttctaaatcaaaatatcattttcgaattgcatgtcggaaaaaacattaagaacataa |
32460155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 23979619 - 23979471
Alignment:
| Q |
135 |
aatgcaaacctaaccatatgtctaagcattagtatatacatgtgatttaattcaaattccttagatgaaaagttgatgtcttgccctttctaaataaaaa |
234 |
Q |
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|||||||| |||||| ||||| || ||||||| || |||| ||||||||| || || |||||||| ||| || |||||| || |||| |||| |||| |
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| T |
23979619 |
aatgcaaaactaaccctatgtataggcattagcatctacacatgatttaatccagatcccttagataaaatgtcaatgtctcgcactttttaaaacaaaa |
23979520 |
T |
|
| Q |
235 |
attcatttttaaattacacgtcagaaaaagcatcaagaacataattaaa |
283 |
Q |
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||||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
23979519 |
attcattttcggatttcacgtcagtaaaagcattaagaacataattaaa |
23979471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 25007268 - 25007120
Alignment:
| Q |
135 |
aatgcaaacctaaccatatgtctaagcattagtatatacatgtgatttaattcaaattccttagatgaaaagttgatgtcttgccctttctaaataaaaa |
234 |
Q |
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||||||||||||| | ||||| || |||||||||| ||| |||||||||||||||| |||||| |||||| ||||||| | |||||||||| ||| |
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| T |
25007268 |
aatgcaaacctaatcttatgtttatgcattagtatctactcatgatttaattcaaattatttagataaaaagtcgatgtctcacactttctaaattaaat |
25007169 |
T |
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| Q |
235 |
attcatttttaaattacacgtcagaaaaagcatcaagaacataattaaa |
283 |
Q |
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|||| |||| ||| |||||||||| ||| || |||||||||||||| |
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| T |
25007168 |
gttcaattttggattgcacgtcagaataagtattgagaacataattaaa |
25007120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 31999392 - 31999460
Alignment:
| Q |
362 |
gaagattggagaaggaagaacatctaaaagcttgaatccaagctccaaatggcttccaatggtgaagaac |
431 |
Q |
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| T |
31999392 |
gaagaatggtgaaggaggagcatcaacaatcttgaatccaagctcc-aatggcttcctatggtgaagaac |
31999460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 12062336 - 12062383
Alignment:
| Q |
379 |
gaacatctaaaagcttgaatccaagctccaaatggcttccaatggtgaa |
427 |
Q |
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| T |
12062336 |
gaacatcaacaagcttgaatccaagctcc-aatggcctccaatggtgaa |
12062383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 32928980 - 32929089
Alignment:
| Q |
135 |
aatgcaaacctaaccatatgtctaagcattagtatatacatgtgatttaattcaaattccttagatgaaaagttgatgtcttgccctttctaaataaaaa |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||| | ||||||||||||||| ||| || ||||||||| |||| | ||| |||||||| || |
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| T |
32928980 |
aatgcaaacctaacactatgtctaagcattaacatctacacataatttaattcaaattctttacataaaaagttgaggtctcgtacttactaaataataa |
32929079 |
T |
|
| Q |
235 |
attcattttt |
244 |
Q |
| |
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|||||||| |
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| T |
32929080 |
tatcattttt |
32929089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 3472982 - 3472950
Alignment:
| Q |
496 |
tatttacaagtctatttataagtgacagaaaat |
528 |
Q |
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| T |
3472982 |
tatttacaagtctatttataagtggcagaaaat |
3472950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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