View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_20 (Length: 378)
Name: NF2557_high_20
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 6188722 - 6188374
Alignment:
| Q |
15 |
aagaagacaattgttgaagttaagaaaaagaaagcataatggaaaatgttgttggatgttttacgaatttgatgtatcagtcgattcaacaggttggaat |
114 |
Q |
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| T |
6188722 |
aagaagacaatcgttgaagttaagaaaaagaaagtataatggaaaatgttgttggatgttttacgaatttaatgtatcagttgattcaacaggttggaat |
6188623 |
T |
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| Q |
115 |
ggaatttgacaagatctttcgtttatttgatctcgtttgagtcgtagtttcgttaaataagttgaataaatgttaaattgggttgaactattgaaaatat |
214 |
Q |
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| T |
6188622 |
ggaatttgacaagatctttcgtttatttgatctcgtttgagtcgtagtttcgttaaataagttgaataaatgttgaattgggttgaactattgaaaatat |
6188523 |
T |
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| Q |
215 |
gtatgaaatattcgaacttgcatcctttactactctagtatagtgttgtagttgtagagaccattaaatttagagatagctctaaatctgctacaataca |
314 |
Q |
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| T |
6188522 |
gtatgaaatattcgaacttgcattctttactactctagtataatgttgtagttgtagagaccgttaaatttagagatagctctaaatctgctacaataca |
6188423 |
T |
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| Q |
315 |
tgatccacacacaatatttttgcatatgtcacaaagtgagtgctaatgt |
363 |
Q |
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| T |
6188422 |
tgatccaaacacaatatttttgcatatgtcacaaagtgagtgataatgt |
6188374 |
T |
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