View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2557_high_21 (Length: 373)
Name: NF2557_high_21
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 32276026 - 32275669
Alignment:
| Q |
1 |
ctccaagaaggatgctttgaaggatgagaaacggattagatacttcagcggctatttatcttatctacaggcatctattaagtatgtaacagttgttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32276026 |
ctccaagaaggatgctttgaaggatgagaaacggattagatacttcagcggctatttatcttatctacaggcatctattaagtatgtaacagttgttact |
32275927 |
T |
|
| Q |
101 |
accttagtgtattatacttttataaccaaaattttaagttaataaattaatgaactgttgatttggctaattgcagagatggttgcaatgtgaaaggata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32275926 |
accttagtgtattatacttttataaccaaaatttgaagttaataaattaatgaactgttgatttggctaattgcagagatggttgcaatgtgaaaggata |
32275827 |
T |
|
| Q |
201 |
ttttgcttggtcactgctggataattgggagtgggcagctggatattcttcaagatttggtctgtattttgttgactacagagacaatttgaagagatac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32275826 |
ttttgcttggtcactgctggataattgggagtgggcagctggatattcttcaagatttggtctgtattttgttgattacagagacaatttgaagagatac |
32275727 |
T |
|
| Q |
301 |
cctaaacaatctgtccaatggttcaagaacttcttgaaaccagccaaatagttgttaa |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32275726 |
cctaaacaatctgtccaatggttcaagaacttcttgaaaccagccaaatagttgttaa |
32275669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 19340365 - 19340204
Alignment:
| Q |
177 |
agatggttgcaatgtgaaaggatattttgcttggtcactgctggataattgggagtgggcagctggatattcttcaagatttggtctgtattttgttgac |
276 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||| |||| |
|
|
| T |
19340365 |
agatggatgcaatgtaaaaggctattttgtgtggtcactgctggataattgggagtggcaagccggattttcttctagatttggtctgtatttcattgat |
19340266 |
T |
|
| Q |
277 |
tacagagacaatttgaagagataccctaaacaatctgtccaatggttcaagaacttcttgaa |
338 |
Q |
| |
|
|||| |||||| | | ||| ||||| ||| | ||||| |||||||||||||||||||||| |
|
|
| T |
19340265 |
tacaatgacaatctaaggaggtacccaaaaaagtctgttgaatggttcaagaacttcttgaa |
19340204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University