View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_24 (Length: 353)
Name: NF2557_high_24
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 35465730 - 35465426
Alignment:
| Q |
11 |
caaaggtaaaaatagaagcttttcttttctatacttactagatcgggtttcaagtttcaaaggctagattcaaaaggggttgcgttgatctacatcaaga |
110 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35465730 |
caaaggtaaaaataaaagcttttcttttctatacttaatagatcgggtttcaagtttcaaaggctagattcaaaaggggttgcgttgatctacaccaaga |
35465631 |
T |
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| Q |
111 |
tgcttcatttgctttgaaaaatccaatttttctacgagattcagcttttgagatgaatcagttagttgaaagttctgctaattctcaaagggtctctaga |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35465630 |
tgcttcatttgctttgaaaaatccattttttctacgagattcagcttttgagatgaatcagttagttgaaagttctgctaattctcaaagggtctctaga |
35465531 |
T |
|
| Q |
211 |
attcaagctccactggtaatttcagttgattctaatctcatttgttttggttttgattctcatgttcatgacatttgagacatatccatttgatttgatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35465530 |
attcaagctccactggtaatttcagttgattctaatctcatttgttttggttttgattctcatgttcatgacatttgagacatatccatttgatttgatg |
35465431 |
T |
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| Q |
311 |
ttcca |
315 |
Q |
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||||| |
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| T |
35465430 |
ttcca |
35465426 |
T |
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