View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_38 (Length: 284)
Name: NF2557_high_38
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 53515145 - 53514878
Alignment:
| Q |
1 |
tgaaaattaatatgagaggatgagaggacaccgattttaaacctaaatttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515145 |
tgaaaattaatatgagagtatgagaggacaccgattttaaacctaactttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatc |
53515046 |
T |
|
| Q |
101 |
ataatatagttcttcaagtattgaatagagagctgcatataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgac |
200 |
Q |
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| T |
53515045 |
acaatatagttcttcaagtattgaatagagagctgcatataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgac |
53514946 |
T |
|
| Q |
201 |
gatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatatt |
268 |
Q |
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| T |
53514945 |
aatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatatt |
53514878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 108 - 268
Target Start/End: Complemental strand, 53511337 - 53511177
Alignment:
| Q |
108 |
agttcttcaagtattgaatagagagctgcatataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagag |
207 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||| |
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| T |
53511337 |
agttcttcaagtattgaatagagttctgcatacaattgcacttgtaatgtctgtaagcataggctagggtcatggaaaattaaactatacaaagatagag |
53511238 |
T |
|
| Q |
208 |
gtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatatt |
268 |
Q |
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| T |
53511237 |
gtttttcatggtagttaatgataaaagaaaatctagtattcatattcatacatggaatatt |
53511177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 53525983 - 53525878
Alignment:
| Q |
2 |
gaaaattaatatgagaggatgagaggacaccgatttta-aacctaaatttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | | ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
53525983 |
gaaaattaatatgagaggatgtaaggaaaacaatttttgaacctaaatttagatgagaatacataagatagttgaagagaaaattaatctaacatttatc |
53525884 |
T |
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| Q |
101 |
ataata |
106 |
Q |
| |
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| |||| |
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| T |
53525883 |
acaata |
53525878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 53549078 - 53548992
Alignment:
| Q |
137 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggtt |
223 |
Q |
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||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||| |
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| T |
53549078 |
atataattgcacttgtaaagtctgtaagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtggtt |
53548992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 53525469 - 53525365
Alignment:
| Q |
137 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaa |
236 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||| |||||||||| || || |||||||| ||||| |||||||| | ||||||||| |
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| T |
53525469 |
atataattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaa |
53525372 |
T |
|
| Q |
237 |
aatctag |
243 |
Q |
| |
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||||||| |
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|
| T |
53525371 |
aatctag |
53525365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 20197573 - 20197525
Alignment:
| Q |
150 |
tgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatga |
199 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||| |||||||| |
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| T |
20197573 |
tgtaatgt-tgtaagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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