View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_41 (Length: 253)
Name: NF2557_high_41
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 1193026 - 1193229
Alignment:
| Q |
13 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttcatgttgaaaaatgttgaaaagag |
112 |
Q |
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| T |
1193026 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttcatgttgaaaaatgttgaaaagag |
1193125 |
T |
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| Q |
113 |
gtactattattttgttccaagtcccaagcattttgttccaacacttataaaatacagtaatgtgccttctttattgcatcgtagatgaatatgatttcta |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1193126 |
gtactattattttgttccaagtcccaagtattttgttccaacacttataaattacagtaatgtgccttctttattgcatcgtagatgaatatgatttcta |
1193225 |
T |
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| Q |
213 |
agaa |
216 |
Q |
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|||| |
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| T |
1193226 |
agaa |
1193229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 1182098 - 1182216
Alignment:
| Q |
13 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttcatgttgaaaaatgttgaaaagag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1182098 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattctttt-ttgttgaaaaatgttgaaaagag |
1182196 |
T |
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| Q |
113 |
gtactattattttgttccaa |
132 |
Q |
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| T |
1182197 |
gtgctattactttgttccaa |
1182216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 896962 - 897058
Alignment:
| Q |
120 |
tattttgttccaagtcccaagcattttgttccaacacttataaaatacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaa |
216 |
Q |
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| T |
896962 |
tattttgttctaactcacaagtattttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaa |
897058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 1182207 - 1182279
Alignment:
| Q |
144 |
tttgttccaacacttataaaatacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaa |
216 |
Q |
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| T |
1182207 |
tttgttccaacacttataaaataccgtactgtgccttctttattgtattgtggatgtatatggtttctaagaa |
1182279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 896905 - 896952
Alignment:
| Q |
13 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatat |
60 |
Q |
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|||||||||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
896905 |
aatattaccttcagtctagaatattaatgatgtttagaagtttgatat |
896952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 10203500 - 10203607
Alignment:
| Q |
13 |
aatattaccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttcatgttgaaaaatgttgaaaagag |
112 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
10203500 |
aatattaccttcaagctagaattttaattttgtttagaagtttaatattacctcttgaaaagaggtacattatttt-ttgttgaaaaatgttgaaaagag |
10203598 |
T |
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| Q |
113 |
gtactatta |
121 |
Q |
| |
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||||||||| |
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| T |
10203599 |
gtactatta |
10203607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 10203758 - 10203817
Alignment:
| Q |
157 |
ttataaaatacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaa |
216 |
Q |
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||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
10203758 |
ttataaaatacaggaatgtgccttctttttttcatcgtagatgaatatgatttctaagaa |
10203817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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