View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_50 (Length: 236)
Name: NF2557_high_50
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49635692 - 49635910
Alignment:
| Q |
1 |
ttgacatttgaacctctacttacgtgacattttcttctttctcaaacggcgaaatctattcacatctttttctttgaataagctatcgaaattatca-tt |
99 |
Q |
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| T |
49635692 |
ttgacatttgaacctctacttacgtgacattttcttctttctcaaacggcgaaatctattcacatctttttctttgaataagctatcgaaattatcattt |
49635791 |
T |
|
| Q |
100 |
ttgtttgaatttggttcgtcaatcatacaaacataattactattctctaatgcattttgaatccattaaaatagtctatcagccatcattctatttcaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49635792 |
ttgtttgaatttggttcgtcaatcatacaaacataattactattctctaa---attttgaatccattaaaatagtctatcagccatcattctatttcaat |
49635888 |
T |
|
| Q |
200 |
ttttaaagaaaattgttagatt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
49635889 |
ttttaaagaaaattgttagatt |
49635910 |
T |
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