View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_high_9 (Length: 477)
Name: NF2557_high_9
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 3540344 - 3540797
Alignment:
| Q |
11 |
cagagattaaaagagtttataagtcaaggtacaaagttcaagca---actaagaaaatataatactattaacataacaattaacatgttatcatttacgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
3540344 |
cagagattaaaagagtttataagtcaaggtacaaagttcaagcatccacaaagaaaatataatacta---acataataattaacatgttatcatttacgc |
3540440 |
T |
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| Q |
108 |
atnnnnnnnnnnnnnnnnnnnnttagtaattaa---attgtaaaattgttaatggaaagttannnnnnnaagattaccataggggaatttattttggaga |
204 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3540441 |
ataaaaaaaataaaaa------ttagtaattaattaattgtaaaattgttaatggaaagttatttttttaagattaccatagggggatttattttggaga |
3540534 |
T |
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| Q |
205 |
ataaaaagaatataactatatatctgtgagcttaactcaattgataaagacatta--------atgtaaaaattgtgattcaaattccatattaactaac |
296 |
Q |
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| T |
3540535 |
ataaaaagaatataactatatatctgtgagcttaactcaattaataaagatattatattgtatatgtaaaaatcgtgattcaaattccatattaactaac |
3540634 |
T |
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| Q |
297 |
ttattcaccttgagaggtaaatttgtagtcactgaactatttggaagnnnnnnntatcgcctnnnnnnnctctcatttccttatatttcccaagacatga |
396 |
Q |
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||||||||||| | | |||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3540635 |
ttattcaccttaaaaagtaaatttatagtcactgaactatttgaaaaaagaaaatatcgcctaaaaaaactctcatttccttatatttcccaagacatga |
3540734 |
T |
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| Q |
397 |
ttcaaaccatgttaatatcctatattatggagtattaattttttgttggtagcacagtttaag |
459 |
Q |
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| T |
3540735 |
ttcaaaccatgttaatatcctatattatggagtattaattttttgttggtagcacagtttaag |
3540797 |
T |
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