View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_1 (Length: 697)
Name: NF2557_low_1
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_1 |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 36 - 686
Target Start/End: Complemental strand, 51822726 - 51822062
Alignment:
| Q |
36 |
agtacatgataaaaattgtattgaaaaatgatagatagatagataatattttgcatgctggaacataaaaaatattttttgata---------gtttgta |
126 |
Q |
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||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
51822726 |
agtacatgacaaaaattatattggaaaatgatagatagatagataatattttgcatgccggaacataaaaaatattttttgatatttttgatagtttgta |
51822627 |
T |
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| Q |
127 |
ctctaaacaataaattgtcccaggatttagtgagagacaagaattcatatttttcttcaatctctcgttacttgttttgtcaagtctcatgacaagtgtc |
226 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
51822626 |
ctctaaacaataaattggcccacaatttagtgagagacaagaattcatatttttcttcaatctctcgctacttgttttgtcaagtctcatgacaaatgtc |
51822527 |
T |
|
| Q |
227 |
taaatcaaacaaagtnnnnnnnnnnttgtccaatcaaaatatatatttttt-catatcaaacacatccaataactttaactaatatgtaatatatatgaa |
325 |
Q |
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|| |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||||||| |
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| T |
51822526 |
tagatcaaacaaagtaaaaataaaattgtccagtcaaaatatatatttttttcatatcaaacacatccaataactt-aattaatatgtaatacatatgaa |
51822428 |
T |
|
| Q |
326 |
agattagactatttcttttcttaccctccatgtctaatccgaattataaaatccgnnnnnnn--ttagttatatggtatttttcaacgtgtttttaccat |
423 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51822427 |
agattagactatttcttttcttaccctccacgtctagtccaaattataaaatccgaaaaaaaaattagttatatggtatttttcaacgtgtttttaccat |
51822328 |
T |
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| Q |
424 |
tgtcgttgtgagttactaactcaatagcgatgagtacgtgtggcacatgatatcttgttgggccattggaacttgaagcccaatatgtagtttgggctga |
523 |
Q |
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| T |
51822327 |
tgtcggtgtgagttactaactcaatagcgatgagtacgtgtgacacatgatatcttgttgggccattggaacttgaagcccaatatgtagtttgggctga |
51822228 |
T |
|
| Q |
524 |
aagtctaattgtggtcccgacaataacatcgttttccttgtttat-cttgattttgattaaattaagtttggagggttgtaagtgtattaaagggaaagt |
622 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
51822227 |
aagtccaattgtggtcccgacaataacatcgttttccgtgtttatccttgattttgattaaattaagtttggagggtagtgagtgtattaaagggaaagt |
51822128 |
T |
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| Q |
623 |
ctgaccctgaaacagttcccccctaacaacaattccgtatcatcttc--ctctttctattgtctgt |
686 |
Q |
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| T |
51822127 |
ctgaccctgaaacagttcccccctaacaacaattctgtatcatcttcctctctttctattgtctgt |
51822062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51822775 - 51822732
Alignment:
| Q |
1 |
ttatataaatggtgcctttgattcgtaaaacaataagtacatga |
44 |
Q |
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| T |
51822775 |
ttatataaatggtgtctttgattcgtaaaacaataagtacatga |
51822732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0332 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 723 - 826
Alignment:
| Q |
133 |
acaataaattgtcccaggatttagtgagagacaagaattcatatttttcttcaatctctcgttacttgttttgtcaagtctcatgacaagtgtctaaatc |
232 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||| ||||| | | ||||| | ||||||||||||| | ||||||||| || ||||||| |
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| T |
723 |
acaaaaaattgtcccatggtttagtgagagacaagaattcatgtttttgtctagtctcttgctacttgttttgtccactctcatgacccgttactaaatc |
822 |
T |
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| Q |
233 |
aaac |
236 |
Q |
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|||| |
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| T |
823 |
aaac |
826 |
T |
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