View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2557_low_10 (Length: 470)
Name: NF2557_low_10
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_10 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0536 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 209 - 451
Target Start/End: Complemental strand, 7527 - 7284
Alignment:
| Q |
209 |
tcatttgaacacttattttgtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7527 |
tcatttgaacacttatttagtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
7428 |
T |
|
| Q |
309 |
ccttcgnnnnnnn-tgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
407 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7427 |
ccttcgaaaaaaaatgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
7328 |
T |
|
| Q |
408 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttcc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7327 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttcc |
7284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 7707 - 7538
Alignment:
| Q |
10 |
agtagcaaaggtagaagaagtattatccacaggattaccaagatctcattcctggtaaccggaagattaacacataaagaaaagtattatcagcaggttt |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
7707 |
agtaacaaaagtagaagaagtattatccacaggattaccaagatctcattcctggtaaccggaagattaacacacaaagaaaagtattatccgcaggttt |
7608 |
T |
|
| Q |
110 |
tgactcaattgaaaaatgcctaaattcatttgtgtg--taggttttcatgtgatatttgacaatccgtct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7607 |
tgactcaattgaaaaatgcctaaattcatctgtgtgtataggttttcatgtgatatttgacaatcagtct |
7538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University