View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2557_low_11 (Length: 468)

Name: NF2557_low_11
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2557_low_11
NF2557_low_11
[»] chr4 (9 HSPs)
chr4 (125-467)||(51822756-51823097)
chr4 (1-119)||(51823128-51823246)
chr4 (59-116)||(43480315-43480372)
chr4 (59-116)||(37306457-37306514)
chr4 (59-116)||(51475215-51475272)
chr4 (59-116)||(30111840-30111896)
chr4 (63-104)||(27362642-27362683)
chr4 (59-111)||(6540301-6540353)
chr4 (60-116)||(50251505-50251561)
[»] scaffold0922 (1 HSPs)
scaffold0922 (63-116)||(738-791)
[»] chr7 (10 HSPs)
chr7 (59-116)||(47822052-47822109)
chr7 (59-114)||(557428-557483)
chr7 (59-114)||(36738532-36738587)
chr7 (59-104)||(29310473-29310518)
chr7 (65-116)||(39237733-39237784)
chr7 (61-112)||(42815632-42815683)
chr7 (61-114)||(3399039-3399092)
chr7 (59-104)||(25695964-25696009)
chr7 (59-115)||(46947813-46947869)
chr7 (61-113)||(49160301-49160353)
[»] chr1 (5 HSPs)
chr1 (59-116)||(19078984-19079041)
chr1 (59-116)||(19126872-19126929)
chr1 (59-116)||(24886110-24886167)
chr1 (78-116)||(932052-932090)
chr1 (63-116)||(29068151-29068204)
[»] chr2 (6 HSPs)
chr2 (63-115)||(6951771-6951823)
chr2 (59-116)||(5140021-5140078)
chr2 (63-112)||(8503850-8503899)
chr2 (63-116)||(42635380-42635433)
chr2 (60-116)||(7709818-7709874)
chr2 (59-113)||(14960699-14960753)
[»] chr8 (5 HSPs)
chr8 (61-116)||(33440557-33440612)
chr8 (59-104)||(30085429-30085474)
chr8 (59-116)||(6580902-6580958)
chr8 (60-113)||(12212198-12212251)
chr8 (60-113)||(12456626-12456679)
[»] chr3 (7 HSPs)
chr3 (59-114)||(13639477-13639532)
chr3 (59-109)||(20909344-20909394)
chr3 (59-116)||(38602881-38602938)
chr3 (59-116)||(29235720-29235777)
chr3 (59-116)||(54186980-54187037)
chr3 (63-109)||(26223195-26223241)
chr3 (78-114)||(46893416-46893452)
[»] chr5 (4 HSPs)
chr5 (59-114)||(18237187-18237242)
chr5 (59-116)||(30892180-30892237)
chr5 (61-116)||(17190662-17190717)
chr5 (63-116)||(42958511-42958564)
[»] chr6 (1 HSPs)
chr6 (59-116)||(7447617-7447674)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 125 - 467
Target Start/End: Complemental strand, 51823097 - 51822756
Alignment:
Q  125 ggttaaattattgaagaatttgaattttgaaatgtgcttcttgcaagtataaataaaacagttacatatgaaggacccaactttttacctatattttaga 224  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51823097 ggttaaattattgaagaatttgaattttgaaatatgcttcttgcaggtataaataaaacagttacatatgaaggacccaactttttacctatattttaga 51822998  T
Q  225 cattgtttcatgagtagtcaaaggggtagaaaaatgtannnnnnnnaggtcttggggttcatatatttctcatagttctaagagcgttcactttgttctc 324  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  51822997 cattgtttcatgagtagtcaaaggggtagaaaaatgtattttttt-aggtcttggggttcatatatttcttatagttctaagagcgttcactttgtcctc 51822899  T
Q  325 accctgacgatgagagttgaactcatattctagtgggttatgagtctaactccttatcaactgaatcaacatttattgattggtagaaaaatgttgaact 424  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51822898 accctgacgatgagagttgaactcatattctaatgggttatgagtctaactccttatcaactgaatcaacatttattgatcggtagaaaaatgttgaact 51822799  T
Q  425 cataagagnnnnnnnnagatatattatataaatggtgcctttg 467  Q
    ||||||||        ||||||||||||||||||||| |||||    
T  51822798 cataagagttttttttagatatattatataaatggtgtctttg 51822756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 51823246 - 51823128
Alignment:
Q  1 aaggaattcttaattaccagaatattttagcatcttgtacnnnnnnnnnnccatcctgtgggtgaaactcatatggatctcaccactttatgtgcgatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||| | ||| |||||||||| ||| |||||||||||||||||||||||    
T  51823246 aaggaattcttaattaccagaatattttagcatcttgtacaaaaaaaaaaccatcatatggatgaaactcatgtgggtctcaccactttatgtgcgatcc 51823147  T
Q  101 attttcaatgtgtggtcca 119  Q
    ||||| |||||||||||||    
T  51823146 atttttaatgtgtggtcca 51823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 43480372 - 43480315
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  43480372 tgggtgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggt 43480315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 37306457 - 37306514
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||    
T  37306457 tgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtggt 37306514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 51475215 - 51475272
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  51475215 tgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtggt 51475272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 30111896 - 30111840
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||||||||||||||||||||| ||| || || |||||||||||    
T  30111896 tgggtgaaactcatgtggatctcaccactttatgtgggat-caattccaatgtgtggt 30111840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 27362683 - 27362642
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattt 104  Q
    |||||||||| ||||||||||||||||| ||| |||||||||    
T  27362683 tgaaactcatgtggatctcaccactttacgtgagatccattt 27362642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 6540353 - 6540301
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgt 111  Q
    ||||||||||| || |||||||||||||||| |||  ||||||||| ||||||    
T  6540353 tgggtgaaacttatgtggatctcaccactttgtgtaggatccatttccaatgt 6540301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 50251505 - 50251561
Alignment:
Q  60 gggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||||||| ||  |||||||| |||| ||| ||||||||||||| |||||||    
T  50251505 gggtgaaactcatgtgagtctcaccattttacgtgggatccattttcaacgtgtggt 50251561  T

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Target: scaffold0922 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 791 - 738
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  791 tgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggt 738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 47822109 - 47822052
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  47822109 tgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtggt 47822052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 557428 - 557483
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  557428 tgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtgtg 557483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 36738587 - 36738532
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| ||| |||||    
T  36738587 tgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaacgtgtg 36738532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 29310473 - 29310518
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattt 104  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  29310473 tgggtgaaactcatgtgggtctcaccactttatgtgggatccattt 29310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 39237784 - 39237733
Alignment:
Q  65 aaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||| ||| |||||||||||||| || ||||||||| |||||||||||    
T  39237784 aaactcatgtgggtctcaccactttatatgggatccatttccaatgtgtggt 39237733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 42815683 - 42815632
Alignment:
Q  61 ggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtg 112  Q
    |||||||||||| ||| ||||||||||||||| |  ||||||||||||||||    
T  42815683 ggtgaaactcatgtgggtctcaccactttatggggaatccattttcaatgtg 42815632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 3399039 - 3399092
Alignment:
Q  61 ggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    |||||||||||| ||| ||||||||||||||||  |||  ||||||||||||||    
T  3399039 ggtgaaactcatgtgggtctcaccactttatgtaagatttattttcaatgtgtg 3399092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 25696009 - 25695964
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattt 104  Q
    |||||||||||||| |||||||||||| |||||||| | |||||||    
T  25696009 tgggtgaaactcatgtggatctcaccattttatgtgaggtccattt 25695964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 46947813 - 46947869
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtgg 115  Q
    |||||||||| ||| ||| ||||||||||||||| | ||| ||||||||| ||||||    
T  46947813 tgggtgaaacccatgtgggtctcaccactttatgcgggatgcattttcaaagtgtgg 46947869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 49160301 - 49160353
Alignment:
Q  61 ggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgt 113  Q
    ||||||| ||| |||| ||||| |||||||| || ||||||||||||||||||    
T  49160301 ggtgaaattcacatgggtctcaacactttatttgggatccattttcaatgtgt 49160353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 19079041 - 19078984
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||    
T  19079041 tgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggt 19078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 19126929 - 19126872
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||    
T  19126929 tgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggt 19126872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 24886167 - 24886110
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||| ||||||||| |||| |||| |||||||||||    
T  24886167 tgggtgaaactcatgtgggtctcaccgctttatgtgggatctatttacaatgtgtggt 24886110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 932090 - 932052
Alignment:
Q  78 tctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggt 932052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 29068204 - 29068151
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||| ||| |||||||| |||||||| |||| |||| |||||||||||    
T  29068204 tgaaactcatgtgggtctcaccattttatgtgggatcaatttccaatgtgtggt 29068151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 6951823 - 6951771
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtgg 115  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  6951823 tgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtgg 6951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 5140021 - 5140078
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||||||||  || | ||||||||||||||| |||||||||||||||||||||    
T  5140021 tgggtgaaactcatgcgggtttcaccactttatgtgggatccattttcaatgtgtggt 5140078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 8503899 - 8503850
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtg 112  Q
    |||||||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  8503899 tgaaactcatgtggatctcaccactttatgtgagattcatttttaatgtg 8503850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 42635433 - 42635380
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||| ||| ||||| |||||||||||  ||||||||||||||||||||    
T  42635433 tgaaactcatgtgggtctcatcactttatgtggaatccattttcaatgtgtggt 42635380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 7709874 - 7709818
Alignment:
Q  60 gggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||||||| |||  |||||||||||||||| |||| |||| |||||||||||    
T  7709874 gggtgaaactcatgtgggactcaccactttatgtgggatctatttccaatgtgtggt 7709818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 14960699 - 14960753
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgt 113  Q
    ||||||||||||||||   |||||| | |||||||| ||||||||||||||||||    
T  14960699 tgggtgaaactcatataagtctcactattttatgtgagatccattttcaatgtgt 14960753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 33440557 - 33440612
Alignment:
Q  61 ggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||    
T  33440557 ggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggt 33440612  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 30085429 - 30085474
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattt 104  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  30085429 tgggtgaaactcatgtggatctcaccactttatgtgggatccattt 30085474  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 6580958 - 6580902
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||| ||||||||||||||||| ||| ||||| |||||||||||    
T  6580958 tgggtgaaactcatgtgggtctcaccactttatgtgggat-catttccaatgtgtggt 6580902  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 12212251 - 12212198
Alignment:
Q  60 gggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgt 113  Q
    |||| ||| |||||||||||||||||||||||||| || |||||| ||| ||||    
T  12212251 gggtaaaattcatatggatctcaccactttatgtgggacccatttccaaagtgt 12212198  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 12456679 - 12456626
Alignment:
Q  60 gggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgt 113  Q
    |||| ||| |||||||||||||||||||||||||| || |||||| ||| ||||    
T  12456679 gggtaaaattcatatggatctcaccactttatgtgggacccatttccaaagtgt 12456626  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 13639532 - 13639477
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||    
T  13639532 tgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtg 13639477  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 20909344 - 20909394
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaat 109  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  20909344 tgggtgaaactcatgtgggtctcaccactttatgtgggatccattttcaat 20909394  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 38602938 - 38602881
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| ||  |||||| |||||||||| |||||||||||||||||||||    
T  38602938 tgggtgaaactcatgtgagtctcactactttatgtgggatccattttcaatgtgtggt 38602881  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 29235777 - 29235720
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||||||  ||||||||||||||||  |||||||||  ||||||||||    
T  29235777 tgggtgaaactcatatgagtctcaccactttatgttggatccatttctaatgtgtggt 29235720  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 54186980 - 54187037
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||| || ||||||||| |||||||| |||||||||  ||||||||||    
T  54186980 tgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtgtggt 54187037  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 26223195 - 26223241
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaat 109  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||    
T  26223195 tgaaattcatgtggatctcatcactttatgtgggatccattttcaat 26223241  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 46893416 - 46893452
Alignment:
Q  78 tctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtg 46893452  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 18237187 - 18237242
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtg 114  Q
    ||||||||| |||| ||| ||||||||||||||||| |||| ||||||||||||||    
T  18237187 tgggtgaaattcatgtgggtctcaccactttatgtgggatctattttcaatgtgtg 18237242  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 30892237 - 30892180
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||||||||||||  |||||||| |||||||| |||||||||  ||||||||||    
T  30892237 tgggtgaaactcatatgagtctcaccattttatgtgggatccatttctaatgtgtggt 30892180  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 17190662 - 17190717
Alignment:
Q  61 ggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||| || ||| ||||||||||||||||| |||||||||  ||||||||||    
T  17190662 ggtgaaacttatgtgggtctcaccactttatgtgggatccatttctaatgtgtggt 17190717  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 42958564 - 42958511
Alignment:
Q  63 tgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    ||||||||||  || ||||||||||||||||| ||||||||| ||||| |||||    
T  42958564 tgaaactcatgcgggtctcaccactttatgtgggatccatttccaatgcgtggt 42958511  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 7447617 - 7447674
Alignment:
Q  59 tgggtgaaactcatatggatctcaccactttatgtgcgatccattttcaatgtgtggt 116  Q
    |||||||| ||||| ||| ||||||||||||||||| |||||||||  ||||||||||    
T  7447617 tgggtgaagctcatgtgggtctcaccactttatgtgggatccatttctaatgtgtggt 7447674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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