View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_16 (Length: 405)
Name: NF2557_low_16
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 24825271 - 24824883
Alignment:
| Q |
1 |
atgaaatttgaactaatgttgagaatttctagtgaccaaaacctgttgatttttgcaggtaatggaccccataaacctaatgaaaccaatgacaaaacct |
100 |
Q |
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| T |
24825271 |
atgaaatttgaactaatgttgagaatttctagtgaccaaaacctgttgatttttgcaggtaatggaccccataaacctaatgaaaccaatgacaaaacct |
24825172 |
T |
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| Q |
101 |
tcaaatttgaaagttttgtcaaaacagtgaaaaatgaatcagttgaaaaagctcctgaaagtgcttgaaaaggtttgttgatatgtgaagatggagatgt |
200 |
Q |
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| T |
24825171 |
tcaaatttgaaagttttgtcaaaacagtgaaaaatgaatcagttgaaaaagctcctgaaagtgcttgaaaaggtttgttgatatgtgaagatggagatgt |
24825072 |
T |
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| Q |
201 |
tttgtttccaatgatagttaattcggttacgcgaccgttcgaacaaactattttgagtgaaggtgaaggagggaggaaacaaaagtttgtccaattgttc |
300 |
Q |
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| T |
24825071 |
tttgtttccaatgatagttaattcggttacgcgaccgttcgaacaaactattttgagtgaaggtgaaggagggaggaaacaaaaatttgtccaattgttc |
24824972 |
T |
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| Q |
301 |
catccttgaagtactggtggatattctaaaagtttttgaacttggaaaagaattctagtttctgtttgtgctaattgtgcaagtgaagt |
389 |
Q |
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| T |
24824971 |
catccttgaagcactggtggatattctaaaagtttttgaacttggaaaagaattctagtttctgtttgtgctaattgtgcaagtgaagt |
24824883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 16216497 - 16216581
Alignment:
| Q |
57 |
aggtaatggaccccataaacctaatgaaaccaatgacaaaaccttcaaatttgaaagttttgtcaaaacagtgaaaaatgaatca |
141 |
Q |
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| T |
16216497 |
aggtagtggaccccacaaaccaagtaaaaccaatgacaaaaccttcatgtttgaaagttttgtcaaaacagtgaaaaaagaatca |
16216581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 16963753 - 16963837
Alignment:
| Q |
57 |
aggtaatggaccccataaacctaatgaaaccaatgacaaaaccttcaaatttgaaagttttgtcaaaacagtgaaaaatgaatca |
141 |
Q |
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| T |
16963753 |
aggtagtggaccccacaaaccaagtgaaaccaatgacaaaaccttcatctttgaaagctttgtcacaacagtaaaaaaagaatca |
16963837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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