View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_22 (Length: 365)
Name: NF2557_low_22
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 6993320 - 6993654
Alignment:
| Q |
13 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaacttgggttaagacgacctttgtgggttctattcaacccagccac |
112 |
Q |
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| T |
6993320 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaactcgggttaagacgacctttgtgggttctattcaacccagccac |
6993419 |
T |
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| Q |
113 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagnnnnnnnaggccactccttcccccttatccccatcgat |
212 |
Q |
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| T |
6993420 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagtttttttaggccactccttcccccttatccccatcgat |
6993519 |
T |
|
| Q |
213 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactattattc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6993520 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactgttattc |
6993619 |
T |
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| Q |
313 |
cactcttcattttcatttccaactctaacaaactt |
347 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6993620 |
cactcttcattttcatttccaactctaacaaactt |
6993654 |
T |
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