View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_23 (Length: 364)
Name: NF2557_low_23
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 15108312 - 15108649
Alignment:
| Q |
10 |
attattctagtgactttgcaatgacggaaagaggtttaaactgtttcatcggttaagtggtagtattctcatcttttacctgtttggcatcaatcctgcg |
109 |
Q |
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| T |
15108312 |
attattctagtgactttgcaatgacggaaagtggtttaaactgtttcatcggttaagtggtagtattctcatctttcacctgtttggcatcaatcctgcg |
15108411 |
T |
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| Q |
110 |
cacatgctgatatctccaagcaggcnnnnnnnggaaagttctgtatcaaacacatc--attgcatataaacttcgaaagtttgtgatcttgtgtttgagg |
207 |
Q |
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| T |
15108412 |
catatgctgatatctccaagcaggcaaaagaaggaaagttctgtatcaaacacatttaattgcatataaacttcgaaagtttgtgatcttgtgtttgagg |
15108511 |
T |
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| Q |
208 |
atctggatcaataaattcctgtatcagcattttcttagcttcaagaaattcttgttcaacaacacatcttacacgatatcagcaacacatcctgctccga |
307 |
Q |
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| T |
15108512 |
atctggatcaataaattcctgtatcggcattttcttagcttcaagaaattcttattcaacaacacatcttacacgatatcagcaacacatcctgctctga |
15108611 |
T |
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| Q |
308 |
cattcgctgatggtttttcgaactttcataggtttgca |
345 |
Q |
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| T |
15108612 |
cattcgctgatggtttttcgaactttcataggtttgca |
15108649 |
T |
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