View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_25 (Length: 350)
Name: NF2557_low_25
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 39677991 - 39677659
Alignment:
| Q |
18 |
aagtttacttgatgcttgatatgaccnnnnnnngaaatgttactcatttttcctgtggttacggtggactcacatgtcaccgtcattgttctatcaaggc |
117 |
Q |
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| T |
39677991 |
aagtttacttgatgcttgatatgaccaaaaaaagaaatgttactcatttttcctgtggttacggtggactcacatgtcaccatcattgttttatcaaggc |
39677892 |
T |
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| Q |
118 |
atctgcctgcattacgacacaagaggactgcatccgaaataatttataagctaaagtcacattgagaaagttagtcaatcatataatttcattttaaaaa |
217 |
Q |
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| T |
39677891 |
atctgcctgcattacgacacaagaggactccatccgaaataatttataagctaaagtcacattgagaaatttagtcaatcatataatttcattttaaaaa |
39677792 |
T |
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| Q |
218 |
gtgtatagtattaagtagttatccttctaagatataaattgaatcatttgaaacaaaaattaagtaaaatgataggtttcgggaaatagctagtagtatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677791 |
gtgtatagtattaagtagttatccttctaagatataaattgaatcatttgaaacaaaaattaagtaaaatgataggtttcgggaaatagctagtagtatt |
39677692 |
T |
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| Q |
318 |
aattatcacagttttaaagtcagttttttattt |
350 |
Q |
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| T |
39677691 |
aattatcacagttttaaggtcagttttttattt |
39677659 |
T |
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