View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2557_low_30 (Length: 327)
Name: NF2557_low_30
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 11984941 - 11985256
Alignment:
| Q |
2 |
acatcaaccacattcggccatgcatctatctacaatattatacatgtatttatcacgatggcctaccgtgannnnnnnnnnnnnnnncttctataaaatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
11984941 |
acatcaaccacattcggccatgcatctctctacaatagtatacatatattcatcacgatggcctatcgtgatttttttattttttttcttctgtaaaatc |
11985040 |
T |
|
| Q |
102 |
acagtagatcatcatgattctgatataccgattatgataccaaacatatcgaataaagtttgtaaggcaatcacaattgtcaccacgacccgaataaaat |
201 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11985041 |
acagtagatcatcataattctaatataccgattatgataccaaacatatcgaataaagtttgcaaggcaatcacaattgtcaccacgaccagaataaaat |
11985140 |
T |
|
| Q |
202 |
acttaagcaaaataaagtttgttggtttagttagttacctttctgcaattgatcccatctttagttgaaagttgaatagagagagaataatgcttcactt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11985141 |
acttaagcaaaataaagtttgttggtttagttagttacctttctgcaattgatcccatctttagttgaaagttgaatagagagagaataatgcttcactt |
11985240 |
T |
|
| Q |
302 |
cagctatagttctgtg |
317 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
11985241 |
cagctatagctctgtg |
11985256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University