View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2557_low_31 (Length: 327)
Name: NF2557_low_31
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 31268712 - 31269032
Alignment:
| Q |
1 |
ttagtgcaccaaactaccatatttataaaataataatatgtaagttaaaatcgtgagaccgttgaagaaaaaac-aaaagaatgagttattttaagatga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31268712 |
ttagtgcaccaaactaccatatttataaaatattaatatgtaaattaaaatcgtgagaccgttgaagaaaaaacaaaaagaatgagttattttaagatga |
31268811 |
T |
|
| Q |
100 |
gataacttaatgaaattcacaaaataatttttgagtggagatttctaccgaagttattctaagaattaaactcaag-nnnnnnnnattactgcagttatt |
198 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
31268812 |
gataactcaatgaaattcacaaaataacttttgagtagagatttctaccg-agttattctaagaattaaagtcaagtttttttttattcctggagttatt |
31268910 |
T |
|
| Q |
199 |
ctaagaattaaactcagnnnnnnnnnnnnngttggagaagaatcatatcaccaattctttcgatatgaatatcattt-gtgtgtcataagaatttgatca |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
31268911 |
ctaagaattaaactcagtttttttgtttttgttggagaagaatcatatcaacaattctttcaatatgaatatcatttggtgtgtcatgagaatttgatca |
31269010 |
T |
|
| Q |
298 |
tgcacaagttgtgtccaccttt |
319 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
31269011 |
tgcacaagttgggtccaccttt |
31269032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University