View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_35 (Length: 314)
Name: NF2557_low_35
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 53515417 - 53515127
Alignment:
| Q |
7 |
gtgagaagaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgat |
106 |
Q |
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| T |
53515417 |
gtgagaagaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgat |
53515318 |
T |
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| Q |
107 |
tttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctg |
206 |
Q |
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| T |
53515317 |
tttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctg |
53515218 |
T |
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| Q |
207 |
tcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagagt |
297 |
Q |
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| T |
53515217 |
tcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagagt |
53515127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 62 - 296
Target Start/End: Complemental strand, 53526199 - 53525967
Alignment:
| Q |
62 |
aaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatg |
161 |
Q |
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|||||||||||||||| || || |||||||| |||||| ||||||||||||||||||| ||| || ||||| | || |||| ||||||||| ||||||| |
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| T |
53526199 |
aaggaaggatgaaaacttcgtagagtgagtgatattctatttgattttgatttgaaatatgtttattctttcatgttttgtgattgttgcccccggaatt |
53526100 |
T |
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| Q |
162 |
catttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatat |
261 |
Q |
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| T |
53526099 |
tgtttcagtttgtcggaaaggaaggatcagtggactgaagttctttcatcggagccaagagcttccatgtatcacaattttctggtcagttttaga--tt |
53526002 |
T |
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| Q |
262 |
acataagatagtagaagtgaaaattaatatgagag |
296 |
Q |
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| T |
53526001 |
acataagatagttgaagagaaaattaatatgagag |
53525967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 53526670 - 53526541
Alignment:
| Q |
55 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctc |
154 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||| | || |||| ||||||||||| |
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| T |
53526670 |
tgacggaacggaaggatgaaaacttcatagagtgagtggtattctgattgattttgatttgaaatgtgtttattctttcatgttttgtgattgttgcctc |
53526571 |
T |
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| Q |
155 |
cggaatgcatttcagtttgacggaaaggaa |
184 |
Q |
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| T |
53526570 |
tggaatttgtttcagtttgacggaaaggaa |
53526541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 53526433 - 53526306
Alignment:
| Q |
57 |
acggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccg |
156 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||| | || || | ||||||||||| | |
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| T |
53526433 |
acggaaaggaaggatgaaaactacatagagtgagtggtattttgtttgattttgatttgaaatgtgtttaatctttcatgttttttgattgttgcctctg |
53526334 |
T |
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| Q |
157 |
gaatgcatttcagtttgacggaaaggaa |
184 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
53526333 |
gaatctgtttcagtttgacggaaaggaa |
53526306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 53526553 - 53526419
Alignment:
| Q |
55 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcct |
153 |
Q |
| |
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||||||||||||| ||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| | || ||||| |
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| T |
53526553 |
tgacggaaaggaatgataaaaacttcatagagtgagtggttattctatttgattttgatttgaaatgtgtttaatctttcgtgttttgtgactgctgcct |
53526454 |
T |
|
| Q |
154 |
ccggaatgcatttcagtttgacggaaaggaaggat |
188 |
Q |
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| T |
53526453 |
ctggaattcatttcagtttaacggaaaggaaggat |
53526419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 53526778 - 53526654
Alignment:
| Q |
64 |
ggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgca |
163 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| | | ||| |||| |||| ||| ||| | |
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| T |
53526778 |
ggaaggataaaaacttcatagagtgagtggtattctgtttgattttgatttcaaatgtgtttaatctttcatgatgtgtgattgctgcccccgaaattcg |
53526679 |
T |
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| Q |
164 |
tttcagtttgacggaaaggaaggat |
188 |
Q |
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|||||||||||||||| |||||||| |
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| T |
53526678 |
tttcagtttgacggaacggaaggat |
53526654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 53526318 - 53526240
Alignment:
| Q |
55 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttt |
132 |
Q |
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| T |
53526318 |
tgacggaaaggaatgctaaaaacttcatagagtgagtggttattctgtttgattttgatttgaaatgtgtttaatcttt |
53526240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 53550245 - 53550092
Alignment:
| Q |
94 |
tattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatg |
193 |
Q |
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|||||||||||||| ||||||| ||||||| |||| ||| | || |||| | || ||| || ||||| ||||||| || |||||| |||||| || || |
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| T |
53550245 |
tattctgtttgattctgatttggaatgtgtttaatttttcatgttttgtgactgctgcttctggaattggtttcagtctggcggaaaagaaggagcagtg |
53550146 |
T |
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| Q |
194 |
gactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggt |
247 |
Q |
| |
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|||||||||||| |||| | |||||||||| | | |||||||||||| |||| |
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| T |
53550145 |
gactgaaattctttcatgggagccaagagctttcgtctatcacaattttttggt |
53550092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 16607976 - 16608049
Alignment:
| Q |
216 |
ccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatat |
291 |
Q |
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|||||||| ||||| |||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||||| |
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| T |
16607976 |
ccaagagcatccatctatcaccattttctggttggttttaga--atacataagatagtggaagagaaaattaatat |
16608049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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