View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_36 (Length: 312)
Name: NF2557_low_36
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 42339659 - 42339370
Alignment:
| Q |
4 |
ctaccactagaaccttgacaaacctacaaacaaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaag |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42339659 |
ctaccactagaaccttgacaaacctacaaacaaaagaaagtttcaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaag |
42339560 |
T |
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| Q |
104 |
aggaaagactgttgaatcgacctctaccaccgcttcctcttccactgctcgatctaccaccatcaaagcatttcgatatagattgagccataagtaacgt |
203 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
42339559 |
aggaaagactgttgaatcgacctctaccaccacttcctcttccactgctcgttctaccaccatcaaagcatttcaaattagattgagccataagtaacgt |
42339460 |
T |
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| Q |
204 |
ctcttgttggtctttcaagcatttcttttctattaggacctcacgttggtagtaggctatacgaccgttgtacattgcaatcgtcctatc |
293 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
42339459 |
ctcttgttggtcttccaagcatttcttttctattaggacctcacgttggtagtaggttatacgactgttgtacattgcaattgtcctatc |
42339370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 42339831 - 42339758
Alignment:
| Q |
35 |
aaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
109 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
42339831 |
aaaagaaaatttcaacataaaaaaacaaataggatgctatcagcaaaacagtagtacgac-agaaaaagaggaaa |
42339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 42339875 - 42339836
Alignment:
| Q |
6 |
accactagaaccttgacaaacctacaaacaaaagaaaatt |
45 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| |
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| T |
42339875 |
accaccagaaccttgacaaaccgacaaacaaaagaaaatt |
42339836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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