View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2557_low_37 (Length: 285)

Name: NF2557_low_37

Description: NF2557

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2557_low_37

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 178; E-Value: 5e-96

Query Start/End: Original strand, 74 - 272

Target Start/End: Complemental strand, 4437305 - 4437107

Alignment:

Q	74	aagcctaatttgaattttgaaacttcaaaattcagtttcttaactactaattaagcagcagcaaccgtccctgtacgaaaagagtaatcttgtgctttgt	173	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4437305	aagcctaatttgaattttgaaacttcaaaattcagtttcttaactactaattaagcagcagcaaccgtccctgtacgaaaagagtaatcttgtgctttgt	4437206	T

Q	174	ttggtgatgaagattttctttgctcnnnnnnnctcaaagccattgatgaagcaatgttcatattcttctctttcgcttcatcaatctctatttgttctt	272	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4437205	ttggtgatgaagattttctttgctctttttttctcaaagccattgatgaagcaatgttcatattcttctctttcgcttcatcaatctctatttgttctt	4437107	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 218 - 272

Target Start/End: Original strand, 40966544 - 40966598

Alignment:

Q	218	gatgaagcaatgttcatattcttctctttcgcttcatcaatctctatttgttctt	272	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40966544	gatgaagaaaggttcatattcttctccttcaattcatctatctctatttgttctt	40966598	T

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