View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_39 (Length: 277)
Name: NF2557_low_39
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_39 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 39292494 - 39292772
Alignment:
| Q |
1 |
agagagagatctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtata |
100 |
Q |
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| T |
39292494 |
agagagagatctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtata |
39292593 |
T |
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| Q |
101 |
tactgcacaatacaagg-nnnnnnnnnnatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtaattgacaaaaatatctt |
199 |
Q |
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| T |
39292594 |
tactgcacaatacaaggtttttttttttatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtagttgagaaaaatatctt |
39292693 |
T |
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| Q |
200 |
gcaactatattt-cnnnnnnnnntattgcaactagttatatagatctcgaacaagatttacggtagaagaagatggaaa |
277 |
Q |
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| T |
39292694 |
gcaactatatttccaaaaaaatatattgcaactagttataaagatctcgaacaagatttacggtagaagaagaaggaaa |
39292772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 39235494 - 39235421
Alignment:
| Q |
37 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
110 |
Q |
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| T |
39235494 |
tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
39235421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 39047822 - 39047759
Alignment:
| Q |
49 |
aagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaata |
112 |
Q |
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| T |
39047822 |
aagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaata |
39047759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 39053836 - 39053763
Alignment:
| Q |
37 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
110 |
Q |
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| T |
39053836 |
tgtcatctcacgaagctccttcaagcaagggtgttcatttggaaacacacttgtgtcaagtatatactgcacaa |
39053763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 7562837 - 7562764
Alignment:
| Q |
37 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
110 |
Q |
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| T |
7562837 |
tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
7562764 |
T |
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