View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2557_low_4 (Length: 619)
Name: NF2557_low_4
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 21 - 601
Target Start/End: Original strand, 11901807 - 11902387
Alignment:
| Q |
21 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11901807 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
11901906 |
T |
|
| Q |
121 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
220 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11901907 |
cgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgtt |
11902006 |
T |
|
| Q |
221 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11902007 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
11902106 |
T |
|
| Q |
321 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
11902107 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgttatgaga |
11902206 |
T |
|
| Q |
421 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
11902207 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggtg |
11902306 |
T |
|
| Q |
521 |
ttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaaga |
601 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11902307 |
ttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaaga |
11902387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 21 - 601
Target Start/End: Complemental strand, 11860747 - 11860167
Alignment:
| Q |
21 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
120 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||| ||||| |
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|
| T |
11860747 |
gatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgacttgttcaagatg |
11860648 |
T |
|
| Q |
121 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
220 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||||||| |
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|
| T |
11860647 |
agaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaatgtt |
11860551 |
T |
|
| Q |
221 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
320 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||| ||||| |
|
|
| T |
11860550 |
tgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatgtctt |
11860451 |
T |
|
| Q |
321 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
420 |
Q |
| |
|
|||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
11860450 |
ttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttatggga |
11860351 |
T |
|
| Q |
421 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaag |
517 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||||||| ||||||||||||| ||| || || | |||||||| |
|
|
| T |
11860350 |
aagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaag |
11860251 |
T |
|
| Q |
518 |
gtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaaga |
601 |
Q |
| |
|
|||| |||||||||||| || ||||||| ||||| ||| ||||||| |||||||||||||||||| || |||| ||||||||| |
|
|
| T |
11860250 |
gtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaaga |
11860167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 601
Target Start/End: Complemental strand, 11828612 - 11828032
Alignment:
| Q |
21 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||| ||| |||||| ||||| |
|
|
| T |
11828612 |
gatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatttgttccagatg |
11828513 |
T |
|
| Q |
121 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
220 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||||||| |
|
|
| T |
11828512 |
cataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaatgtt |
11828416 |
T |
|
| Q |
221 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
320 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| || | |||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
11828415 |
tgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatccatgtctt |
11828316 |
T |
|
| Q |
321 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
420 |
Q |
| |
|
|||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || ||||||||||| || |
|
|
| T |
11828315 |
ttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgtga |
11828216 |
T |
|
| Q |
421 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaag |
517 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| ||| || || | |||||||| |
|
|
| T |
11828215 |
aagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaag |
11828116 |
T |
|
| Q |
518 |
gtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaaga |
601 |
Q |
| |
|
|||| |||||||||||| || ||||| | ||||||||| |||||||| ||||| |||||||||||| || |||| ||||||||| |
|
|
| T |
11828115 |
gtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaaga |
11828032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 21 - 601
Target Start/End: Complemental strand, 12039512 - 12038935
Alignment:
| Q |
21 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
120 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || ||| ||||||| ||||||||||| |||| |||||| ||| | |||||| |||||||||| ||||| |
|
|
| T |
12039512 |
gatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgacttgttccagatg |
12039413 |
T |
|
| Q |
121 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
220 |
Q |
| |
|
||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| || | | | ||||||||| || |||||||||| ||||||| |
|
|
| T |
12039412 |
cgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaa---cgtatttcttgctagctacaaagagtgacaatgtt |
12039316 |
T |
|
| Q |
221 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
12039315 |
tgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatgtctt |
12039216 |
T |
|
| Q |
321 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
420 |
Q |
| |
|
|||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||| || |
|
|
| T |
12039215 |
ttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttgttatgaga |
12039116 |
T |
|
| Q |
421 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| | |||| |||||||||||||| | ||| | ||| |||| | ||||||||| |
|
|
| T |
12039115 |
aagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggtg |
12039016 |
T |
|
| Q |
521 |
ttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaaga |
601 |
Q |
| |
|
|| ||||||||||| || ||||||| |||||||| ||||||| |||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
12039015 |
ttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaaga |
12038935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 583
Target Start/End: Complemental strand, 11732393 - 11731833
Alignment:
| Q |
23 |
tcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatgcg |
122 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||| || |||||||||||| ||||||| || |||||| |
|
|
| T |
11732393 |
tcccatcttagagtcaaatgctgaatgtgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgca |
11732294 |
T |
|
| Q |
123 |
atatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtttg |
222 |
Q |
| |
|
| ||||| | | | | | || ||||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||| || |||| ||||||||| |
|
|
| T |
11732293 |
aaatttccagtttgtccttgaggttgttgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttg |
11732194 |
T |
|
| Q |
223 |
taaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctttt |
322 |
Q |
| |
|
||| |||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||| ||||||| |||||| | |||| | | |||||||||| |
|
|
| T |
11732193 |
taaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtctttt |
11732094 |
T |
|
| Q |
323 |
ggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatgggaaa |
422 |
Q |
| |
|
|||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||||| | |
|
|
| T |
11732093 |
ggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtgggata |
11731994 |
T |
|
| Q |
423 |
gatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtgtt |
522 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||| ||||| || ||||| |||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
11731993 |
gatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgtt |
11731894 |
T |
|
| Q |
523 |
gaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgtta |
583 |
Q |
| |
|
|||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11731893 |
gaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgtta |
11731833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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