View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_40 (Length: 259)
Name: NF2557_low_40
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 1824573 - 1824712
Alignment:
| Q |
15 |
aataagtcccacatcggcagcttatatagcattgagatgaaacctttgatataaacaggtacgttccaactacaatcaattacatgattaaaaaatggta |
114 |
Q |
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| T |
1824573 |
aataagtcccacatcggcagcttatatagcattgagatgaaacctttgatataaaaaggtacgttccaactactatcaattacatggttaaaaaatggta |
1824672 |
T |
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| Q |
115 |
aaatcaaatgttcaaggtggtggtgttgcccgtacaaaca |
154 |
Q |
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| T |
1824673 |
aaatcaaatgtttaaggtggtgatgttgcccgtacaaaca |
1824712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 1824741 - 1824816
Alignment:
| Q |
185 |
caaaatgatgtttttatggggaatcactactttaatta-tttgttttcacctcagttgttctaagcaatttgtccc |
259 |
Q |
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| T |
1824741 |
caaaatgatgttcttatggggaatcactactttaattattttgttttcatctcagttgttctaagcaatttgtccc |
1824816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 1846375 - 1846434
Alignment:
| Q |
15 |
aataagtcccacatcggcagcttatatagcattgagatgaaacctttgatataaacaggt |
74 |
Q |
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| T |
1846375 |
aataagtcccacactggcagcttataaagcattgagaggaaacctttgttataaataggt |
1846434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 1842847 - 1842901
Alignment:
| Q |
15 |
aataagtcccacatcggcagcttatatagcattgagatgaaacctttgatataaa |
69 |
Q |
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| T |
1842847 |
aataagtcccacatcggcagcttataaagcattgggaggaaaccttagctataaa |
1842901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1819771 - 1819825
Alignment:
| Q |
22 |
cccacatcggcagcttatatagca-ttgagatgaaacctttgatataaacaggta |
75 |
Q |
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| T |
1819771 |
cccacatcggcagcttatatagcatttgagaggaaaccttagctataaataggta |
1819825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 1827662 - 1827698
Alignment:
| Q |
15 |
aataagtcccacatcggcagcttatatagcattgaga |
51 |
Q |
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| T |
1827662 |
aataagtcccacatcgacggcttatatagcattgaga |
1827698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1847389 - 1847449
Alignment:
| Q |
15 |
aataagtcccacatcggcagcttatatagcattgagatgaaacctttgatataaacaggta |
75 |
Q |
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| T |
1847389 |
aataagacccacaacggcagcttataatgcattgggaggaaacctttcatataaataggta |
1847449 |
T |
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