View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2557_low_5 (Length: 590)

Name: NF2557_low_5
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2557_low_5
NF2557_low_5
[»] chr3 (23 HSPs)
chr3 (108-287)||(7417759-7417938)
chr3 (115-287)||(8400816-8400988)
chr3 (115-290)||(35198723-35198898)
chr3 (108-297)||(22855838-22856027)
chr3 (115-262)||(50823684-50823831)
chr3 (115-262)||(50852029-50852176)
chr3 (115-286)||(52545283-52545454)
chr3 (119-280)||(34824524-34824685)
chr3 (119-283)||(55467964-55468129)
chr3 (154-290)||(48077979-48078115)
chr3 (119-277)||(43334057-43334215)
chr3 (108-219)||(22371721-22371832)
chr3 (115-201)||(37330606-37330692)
chr3 (122-262)||(50726003-50726143)
chr3 (122-262)||(50786705-50786845)
chr3 (115-201)||(37454743-37454829)
chr3 (116-201)||(30534902-30534987)
chr3 (115-225)||(19872482-19872592)
chr3 (135-233)||(29635883-29635981)
chr3 (115-189)||(25910665-25910739)
chr3 (120-274)||(42876189-42876343)
chr3 (212-290)||(39438915-39438993)
chr3 (115-159)||(773666-773710)
[»] chr7 (17 HSPs)
chr7 (115-287)||(35109652-35109824)
chr7 (116-287)||(38265237-38265408)
chr7 (119-287)||(16059356-16059524)
chr7 (115-290)||(21577097-21577272)
chr7 (115-287)||(34721795-34721967)
chr7 (119-290)||(38405157-38405328)
chr7 (115-281)||(41151139-41151306)
chr7 (119-287)||(18116947-18117115)
chr7 (115-287)||(45278413-45278585)
chr7 (121-287)||(11216730-11216896)
chr7 (120-254)||(12472115-12472249)
chr7 (119-287)||(48176361-48176529)
chr7 (115-235)||(245263-245383)
chr7 (115-230)||(37095209-37095324)
chr7 (115-247)||(23028684-23028816)
chr7 (115-216)||(28407540-28407637)
chr7 (200-287)||(40038626-40038713)
[»] chr5 (8 HSPs)
chr5 (115-287)||(17064284-17064456)
chr5 (119-287)||(20983006-20983174)
chr5 (115-262)||(37976532-37976683)
chr5 (115-281)||(41910793-41910957)
chr5 (196-286)||(35237103-35237193)
chr5 (50-99)||(31640331-31640380)
chr5 (115-231)||(5009416-5009531)
chr5 (121-183)||(31673894-31673956)
[»] chr4 (26 HSPs)
chr4 (119-287)||(46494401-46494569)
chr4 (447-578)||(48175-48306)
chr4 (119-287)||(51066454-51066622)
chr4 (116-272)||(36192517-36192673)
chr4 (115-287)||(39863777-39863949)
chr4 (115-287)||(7173584-7173756)
chr4 (146-287)||(8740409-8740550)
chr4 (115-287)||(50905709-50905881)
chr4 (115-286)||(32139126-32139297)
chr4 (115-268)||(30970383-30970536)
chr4 (115-268)||(51713964-51714117)
chr4 (292-385)||(48369-48462)
chr4 (119-284)||(2294719-2294878)
chr4 (115-219)||(29576444-29576548)
chr4 (115-220)||(55231715-55231820)
chr4 (115-233)||(2570216-2570334)
chr4 (115-188)||(22304090-22304163)
chr4 (119-222)||(41523423-41523526)
chr4 (115-254)||(47626992-47627133)
chr4 (115-206)||(676770-676861)
chr4 (118-206)||(51279035-51279123)
chr4 (115-215)||(4080551-4080651)
chr4 (120-184)||(37990599-37990663)
chr4 (146-237)||(50399672-50399763)
chr4 (119-181)||(23084468-23084530)
chr4 (145-253)||(22423371-22423479)
[»] chr8 (21 HSPs)
chr8 (115-287)||(19723272-19723444)
chr8 (115-287)||(11403962-11404134)
chr8 (115-287)||(32296638-32296810)
chr8 (116-287)||(4840101-4840272)
chr8 (115-287)||(22711470-22711642)
chr8 (119-287)||(28739564-28739732)
chr8 (115-287)||(11610241-11610413)
chr8 (115-267)||(29767169-29767319)
chr8 (172-287)||(27881044-27881159)
chr8 (172-287)||(28021225-28021340)
chr8 (115-287)||(30682800-30682971)
chr8 (149-287)||(24475029-24475167)
chr8 (119-230)||(17095568-17095679)
chr8 (115-272)||(41553261-41553418)
chr8 (115-215)||(36261679-36261779)
chr8 (136-219)||(21355004-21355087)
chr8 (115-215)||(43288105-43288205)
chr8 (119-202)||(11909426-11909509)
chr8 (115-176)||(27879559-27879620)
chr8 (115-176)||(28019740-28019801)
chr8 (221-287)||(6097525-6097591)
[»] chr2 (25 HSPs)
chr2 (115-287)||(40156001-40156173)
chr2 (115-287)||(10745231-10745403)
chr2 (115-287)||(17136348-17136520)
chr2 (115-287)||(44650354-44650526)
chr2 (115-290)||(2754050-2754225)
chr2 (115-287)||(5039381-5039553)
chr2 (127-287)||(6672804-6672964)
chr2 (115-290)||(36380131-36380306)
chr2 (115-255)||(45136969-45137109)
chr2 (115-276)||(21637869-21638030)
chr2 (115-271)||(25987660-25987817)
chr2 (115-287)||(2357075-2357246)
chr2 (115-287)||(7860145-7860317)
chr2 (115-262)||(36836328-36836475)
chr2 (118-287)||(30372682-30372851)
chr2 (115-287)||(26690115-26690287)
chr2 (115-256)||(33066582-33066723)
chr2 (115-283)||(3200847-3201014)
chr2 (115-225)||(558438-558548)
chr2 (115-287)||(21487111-21487282)
chr2 (108-286)||(13047148-13047318)
chr2 (215-287)||(2098939-2099011)
chr2 (127-280)||(4553569-4553723)
chr2 (115-165)||(2098825-2098875)
chr2 (178-233)||(20961496-20961551)
[»] chr6 (9 HSPs)
chr6 (115-290)||(35163749-35163924)
chr6 (116-286)||(19686827-19686997)
chr6 (115-286)||(2711739-2711904)
chr6 (115-225)||(20685348-20685458)
chr6 (115-225)||(17948703-17948813)
chr6 (194-287)||(14496313-14496406)
chr6 (115-287)||(14505524-14505693)
chr6 (127-221)||(15070152-15070246)
chr6 (145-230)||(24336633-24336718)
[»] chr1 (17 HSPs)
chr1 (119-287)||(30054445-30054613)
chr1 (115-287)||(20014419-20014591)
chr1 (127-287)||(21090076-21090236)
chr1 (115-287)||(45323967-45324139)
chr1 (117-287)||(30370061-30370231)
chr1 (115-287)||(12025142-12025314)
chr1 (115-268)||(4573359-4573512)
chr1 (116-286)||(33763254-33763424)
chr1 (117-261)||(30850841-30850985)
chr1 (116-223)||(22024128-22024235)
chr1 (119-286)||(35617942-35618104)
chr1 (115-219)||(14498078-14498182)
chr1 (202-287)||(15034416-15034501)
chr1 (127-204)||(35371756-35371833)
chr1 (128-236)||(44438562-44438670)
chr1 (115-222)||(33762539-33762646)
chr1 (116-176)||(17015192-17015252)
[»] scaffold0021 (1 HSPs)
scaffold0021 (115-287)||(107691-107862)
[»] scaffold0691 (1 HSPs)
scaffold0691 (140-287)||(6993-7136)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 7417938 - 7417759
Alignment:
Q  108 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 207  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  7417938 ggtaaggaaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 7417839  T
Q  208 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7417838 ctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 7417759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 8400988 - 8400816
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 8400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 35198898 - 35198723
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| || ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 35198723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 22856027 - 22855838
Alignment:
Q  108 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 207  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||||||||     
T  22856027 ggtaaggaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctcc 22855928  T
Q  208 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaaggtattga 297  Q
    |||||||| ||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||| |||||| || ||||||    
T  22855927 ctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagttattga 22855838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 50823831 - 50823684
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50823831 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50823732  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| ||||    
T  50823731 ggcactaacgggactcgaacccggattctctcggattcaagacttgtc 50823684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 50852029 - 50852176
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50852029 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50852128  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| ||||    
T  50852129 ggcactaacgggactcgaacccggattctctcggattcaagacttgtc 50852176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 52545454 - 52545283
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||  || ||||||||||||| ||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    ||||||||||| |||||||||||  || |||||||||||||||||||||||||| ||| ||||||| |||||    
T  52545354 ggcactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaaaccttt 52545283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 34824685 - 34824524
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaa 280  Q
    ||| |||  ||||||| | ||||||||||||||||||| || || |||||||||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaa 34824524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 119 - 283
Target Start/End: Complemental strand, 55468129 - 55467964
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcggg-ctcaaagagcacttacaaatataattacatttacctcactccaaaggc 217  Q
    ||||||| ||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||  || ||||||||||||| ||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  218 actagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcc 283  Q
    | ||| || |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  55468029 attagtggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaagcc 55467964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 48077979 - 48078115
Alignment:
Q  154 agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattca 253  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||| |  ||||||||||| ||||||||| |||||    
T  48077979 agggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattca 48078078  T
Q  254 agacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||||||||||||||||||||||||||||||||||||    
T  48078079 agacctgtcattttaccactagaccaagcctttgaag 48078115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 43334057 - 43334215
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagac 277  Q
    ||||||| |||||||| ||||||||||||||||||| || |||||||||||| ||||||    
T  43334157 ctagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 22371721 - 22371832
Alignment:
Q  108 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 207  Q
    ||||||| |||||||||| ||||||||||||| ||||||| || | |||||||| ||||||| ||||||||||||||||||  ||||||||||||||||     
T  22371721 ggtaaggtaaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctcc 22371820  T
Q  208 ctccaaaggcac 219  Q
    ||||||||||||    
T  22371821 ctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 201  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 50726003 - 50726143
Alignment:
Q  122 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 221  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50726003 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50726102  T
Q  222 gcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
     ||| |||||||||||  |||||||||||||||||||||||    
T  50726103 acggggctcgaacccgaattctctcggattcaagacctgtc 50726143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 50786845 - 50786705
Alignment:
Q  122 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 221  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50786845 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50786746  T
Q  222 gcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
     ||| |||||||||||  |||||||||||||||||||||||    
T  50786745 acggggctcgaacccgaattctctcggattcaagacctgtc 50786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 201  Q
    ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 201  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 19872482 - 19872592
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||||||||||  |||||||| |||||||||  ||||||  |||||||  |||||||    
T  19872482 aaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T
Q  215 ggcactagcgg 225  Q
    ||||| |||||    
T  19872582 ggcacaagcgg 19872592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 29635981 - 29635883
Alignment:
Q  135 tggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 233  Q
    ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||  |||||||    
T  29635981 tggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 25910665 - 25910739
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaat 189  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||| |||||| ||||||||||||||||||||    
T  25910665 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaat 25910739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 42876343 - 42876189
Alignment:
Q  120 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 219  Q
    |||||| |||| |||||||| || |||||||| |||||||||| |||  | ||||||||||||||||||  ||||||||||||||||  || |||| |||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacac 42876244  T
Q  220 tagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccacta 274  Q
    |||  | |||||||| || | || |||| || ||||| || || |||||||||||    
T  42876243 tagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccacta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 39438915 - 39438993
Alignment:
Q  212 aaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||||||||||||||  | ||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||||||    
T  39438915 aaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaag 39438993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 773710 - 773666
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa 159  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||||    
T  773710 aaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 35109824 - 35109652
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  35109824 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 35109725  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35109724 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 35109652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 116 - 287
Target Start/End: Original strand, 38265237 - 38265408
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  38265237 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 38265336  T
Q  216 gcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38265337 gcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 38265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 16059356 - 16059524
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| || ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttg 16059524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 21577097 - 21577272
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||||    
T  21577097 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaa 21577196  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21577197 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 21577272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 34721967 - 34721795
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 34721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 38405157 - 38405328
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    ||||||  |||||||| ||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  38405257 ctagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaag 38405328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 41151306 - 41151139
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaata-taattacatttacctcactccaa 213  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||    
T  41151306 aaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaa 41151207  T
Q  214 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaag 281  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41151206 agacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 18116947 - 18117115
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| |||||||| |||||  |||||||||||| ||||||  |||||||||||||||| ||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttg 18117115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 45278585 - 45278413
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| || || ||||    
T  45278585 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaa 45278486  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||    
T  45278485 ggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttg 45278413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 287
Target Start/End: Complemental strand, 11216896 - 11216730
Alignment:
Q  121 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcact 220  Q
    ||||| |||||| ||| || || ||||||| |||| ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  221 agcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |  || |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  11216796 aatggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttg 11216730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 12472249 - 12472115
Alignment:
Q  120 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 219  Q
    |||||| ||||||||||||  |||||||||||  |||||||||||||| ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  220 tagcggagctcgaacccgggttctctcggattcaa 254  Q
    ||| || ||||||||||||||||||||||||||||    
T  12472149 tagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 48176529 - 48176361
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggt-agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 217  Q
    ||||||| ||||||||||||| ||||||||||||  |||||| |||||| |||||||| | ||||||||||  || |||||||||||||  |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  218 actagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  48176429 actagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttg 48176361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 245263 - 245383
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||     
T  245263 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaag 245362  T
Q  215 ggcactagcggagctcgaacc 235  Q
    ||||||||||| |||||||||    
T  245363 ggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  215 ggcactagcggagctc 230  Q
    | ||||||||| ||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||| |||||||| | ||||| |||||||||||| |||||||| ||||| | |||||| |||  ||||||||||||| || ||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  215 ggcactagcggagctcgaacccgggttctctcg 247  Q
    |||| ||| |||| |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||| |||||||   |    ||||||||||||||||||||||||||||  || ||||||||||||| ||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 40038713 - 40038626
Alignment:
Q  200 ttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| || ||||||||||| |||  || |||  | ||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttg 40038626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 7e-69; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 17064456 - 17064284
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||  || ||||||||||||| |||||||    
T  17064456 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaa 17064357  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17064356 ggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 17064284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 20983006 - 20983174
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| |||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  20983106 ctagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttg 20983174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 37976683 - 37976532
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattac----atttacctcactc 210  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||||||||||| ||||||||||||  || ||||    ||||||||| ||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  211 caaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcggattcaagacctgtc 37976532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 41910957 - 41910793
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||| ||||| || |||||| |||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctc-ctccaaa 41910859  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaag 281  Q
    |  |||| |  | ||| |||||   ||||||| ||||||||||||||| ||||||||||||| ||||    
T  41910858 gatactaac-aaactcaaacccaaattctctcagattcaagacctgtctttttaccactagagcaag 41910793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 35237103 - 35237193
Alignment:
Q  196 acatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    ||||||||||| || ||||| ||||||||| ||||||| || | |||||||| ||||||||| | ||||||||||||||||||||||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagccttt 35237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 31640380 - 31640331
Alignment:
Q  50 gaaaagagttagcgaccaagaaattggccaagctattttcttcaaaggta 99  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31640380 gaaaagagttagtgaccaagaaattggcgaagctattttcttcaaaggta 31640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| || ||||||| ||  ||||| ||||| | |||||||||||||  ||||||| || ||||||| ||| ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  215 ggcactagcggagctcg 231  Q
    | ||||| ||| |||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 31673956 - 31673894
Alignment:
Q  121 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactt 183  Q
    ||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||||||| ||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt 31673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 46494401 - 46494569
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46494501 ctagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttg 46494569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 447 - 578
Target Start/End: Complemental strand, 48306 - 48175
Alignment:
Q  447 cgatttttaaattagggagatcaaagccattgagataagaaagatttccccctatttattgatgaaaaactgatcaaagaactcatgagatactttgtta 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48306 cgatttttaaattagggagatcaaagccattgagataagaaagatttccccctatttattgatgaaaaactgatcaaagaactcatgagatactttgtta 48207  T
Q  547 tatgtcacagctacctcatatgatgcaaccta 578  Q
    ||||||||||||||||||||||||||||||||    
T  48206 tatgtcacagctacctcatatgatgcaaccta 48175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 51066622 - 51066454
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  51066522 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttg 51066454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 116 - 272
Target Start/End: Complemental strand, 36192673 - 36192517
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  216 gcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccac 272  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||| |||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac 36192517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 39863777 - 39863949
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||| || |||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 39863949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 7173584 - 7173756
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||  || | |||||||||||  ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||||  || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 7173756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 146 - 287
Target Start/End: Complemental strand, 8740550 - 8740409
Alignment:
Q  146 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctct 245  Q
    ||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  246 cggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  8740450 cggattcaagacctgtctttttaccactagaccaagcctttg 8740409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 50905881 - 50905709
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||  |||||||| |||||| ||||| | ||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||    
T  50905881 aaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaa 50905782  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||    
T  50905781 ggcactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttg 50905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 32139297 - 32139126
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||| |||||| ||| ||||||||| |||||||||||| || |||||||||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  32139297 aaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 32139198  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    | ||||||||| | |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  32139197 gacactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 30970383 - 30970536
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||| || ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcatttta 268  Q
    |||||||| |  |||||||||||| |||||||||||||||||||||||||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 51713964 - 51714117
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||  || ||| ||||||||| || ||||    
T  51713964 aaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaa 51714063  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcatttta 268  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  51714064 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 48462 - 48369
Alignment:
Q  292 tattgaccatatcttttgtaacacaagaatattttagtatagtctaatacgcactaccacgtcaaataaataagtcacattatgaataatgact 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  48462 tattgaccatatcttttgtaacacaagaatattttagtatagtctaataagcattaccacgtcaaataaataagtcacattatgaataatgact 48369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 119 - 284
Target Start/End: Original strand, 2294719 - 2294878
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||| ||||||||||| || |||||       |||||||||||||||  |||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacacttg------taattacatttaccttcctccaaaggca 2294812  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcct 284  Q
    |||||| | |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaagcct 2294878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 29576548 - 29576444
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  29576548 aaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaa 29576449  T
Q  215 ggcac 219  Q
    |||||    
T  29576448 ggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 55231820 - 55231715
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||  || ||||||||||||| || ||||    
T  55231820 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaa 55231721  T
Q  215 ggcact 220  Q
    ||||||    
T  55231720 ggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 2570334 - 2570216
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||||| || ||| ||  ||| ||| ||||||||| |||||||    
T  2570334 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaa 2570235  T
Q  215 ggcactagcggagctcgaa 233  Q
    ||||| |||||||||||||    
T  2570234 ggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 22304090 - 22304163
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 188  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 22304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 41523526 - 41523423
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||  || ||||||||||||| |||||||| ||    
T  41523526 ttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagaca 41523427  T
Q  219 ctag 222  Q
    ||||    
T  41523426 ctag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 47626992 - 47627133
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||| |||||||  ||||||||||| |||||||||||||| | |||||||| | ||| | |  || ||||||||||||| || ||||    
T  47626992 aaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T
Q  215 ggcactagcggag--ctcgaacccgggttctctcggattcaa 254  Q
    |||||||| || |  |||||| ||||||||||||||||||||    
T  47627092 ggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 676861 - 676770
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 206  Q
    ||||||||| | | |||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||  || ||||| |||||||    
T  676861 aaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctc 676770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 51279035 - 51279123
Alignment:
Q  118 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 206  Q
    |||||||| ||||||||||||| |  | |||||||| ||||||||||| ||||||||||||||||||||||  || ||||||| |||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctc 51279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 4080551 - 4080651
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| |  ||||||||||||  ||| ||||||  || |||||| ||| | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4080551 aaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T
Q  215 g 215  Q
    |    
T  4080651 g 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 37990599 - 37990663
Alignment:
Q  120 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactta 184  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||||||| |||||    
T  37990599 tttaggatgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 50399672 - 50399763
Alignment:
Q  146 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccg 237  Q
    |||||||||| |||||| ||  |||||||||| ||||||||||  || ||||||||||||  ||||||  |||||||||| |||||||||||    
T  50399672 tccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 23084468 - 23084530
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcac 181  Q
    ||||||| ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||    
T  23084468 ttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 22423479 - 22423371
Alignment:
Q  145 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctc 244  Q
    |||||| | ||||||||||||||  | |||||| ||||||||||  || ||||||||||||| ||||||||| |||| | | ||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  245 tcggattca 253  Q
    || ||||||    
T  22423379 tcagattca 22423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 19723444 - 19723272
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||||||    
T  19723444 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 19723345  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19723344 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttg 19723272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 11404134 - 11403962
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  11404134 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 11404035  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    | ||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  11404034 gacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttg 11403962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 32296638 - 32296810
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||| | ||| ||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttg 32296810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 116 - 287
Target Start/End: Complemental strand, 4840272 - 4840101
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||||| || ||||||||||||||||||   |||| ||||||||||| ||||||||    
T  4840272 aaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaag 4840173  T
Q  216 gcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  4840172 gcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttg 4840101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 22711642 - 22711470
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  22711642 aaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||| |||  |  ||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  22711542 ggcattagttggactcaaacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttg 22711470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 28739564 - 28739732
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||| |  |||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||| || ||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  28739664 ctagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttg 28739732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 11610413 - 11610241
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||||||| ||| ||| ||||||||  |||||||    
T  11610413 aaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaa 11610314  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||  ||||||| ||| | |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11610313 ggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttg 11610241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 29767319 - 29767169
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||  ||||||||| || ||||    
T  29767319 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcccttcaaa 29767222  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcatttt 267  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||    
T  29767221 ggcactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 27881044 - 27881159
Alignment:
Q  172 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttacca 271  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  272 ctagaccaagcctttg 287  Q
    ||||||||||||||||    
T  27881144 ctagaccaagcctttg 27881159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 28021225 - 28021340
Alignment:
Q  172 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttacca 271  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  272 ctagaccaagcctttg 287  Q
    ||||||||||||||||    
T  28021325 ctagaccaagcctttg 28021340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 30682971 - 30682800
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||  || ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtg-cccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||| || || |||||||| |||| ||||| | |||||||| ||| |||| |||||||||||||||||||||    
T  30682872 ggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttg 30682800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 149 - 287
Target Start/End: Original strand, 24475029 - 24475167
Alignment:
Q  149 aaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcgg 248  Q
    |||| ||| |||||||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||  ||  |||| ||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcgg 24475128  T
Q  249 attcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  24475129 attcaagacctgtcatcttactactagaccaagcctttg 24475167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  219 ctagcggagctc 230  Q
    ||||||| ||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 41553418 - 41553261
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||||||||||||  |||||| |||| |||||||||||||| ||||||||| ||||||||||  || |||||||||| |  |||||||    
T  41553418 aaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaa 41553319  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccac 272  Q
    | || ||| ||  ||||||| |||||||||||| ||||||||||| ||||||||||||    
T  41553318 gacattagtgggactcgaactcgggttctctcgaattcaagacctatcattttaccac 41553261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 36261779 - 36261679
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36261779 aaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T
Q  215 g 215  Q
    |    
T  36261679 g 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  136 ggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 219  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 43288205 - 43288105
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||| |||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||| | || |||||||  |||||||||||||||| |||||||    
T  43288205 aaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T
Q  215 g 215  Q
    |    
T  43288105 g 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattta 202  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||  || |||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 27879559 - 27879620
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 176  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  27879559 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 28019740 - 28019801
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 176  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  28019740 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 6097591 - 6097525
Alignment:
Q  221 agcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||| |||||||| ||| |||||||| |||||||||||||| ||||||||  ||||||||| ||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttg 6097525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 40156173 - 40156001
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  40156173 aaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 40156074  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  40156073 ggcactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttg 40156001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 10745231 - 10745403
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||    
T  10745231 aaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaa 10745330  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  10745331 ggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttg 10745403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 17136520 - 17136348
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17136520 aaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 17136421  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| ||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  17136420 ggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttg 17136348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 44650526 - 44650354
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 44650354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 2754050 - 2754225
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2754050 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2754149  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||| ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2754150 ggcattagtgggactcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaag 2754225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 5039553 - 5039381
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||  ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||| ||| |||    
T  5039553 aaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaa 5039454  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
     |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  5039453 agcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttg 5039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 6672804 - 6672964
Alignment:
Q  127 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 226  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||||||     
T  6672804 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggg 6672903  T
Q  227 gctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  6672904 gcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttg 6672964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 36380131 - 36380306
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||    
T  36380131 aaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaa 36380230  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    ||||||||||| | || |||||| ||| ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  36380231 ggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaag 36380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 45136969 - 45137109
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  45136969 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaag 255  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  45137069 ggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 21638030 - 21637869
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||||  || ||||||||||||| |||||||    
T  21638030 aaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 21637931  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactaga 276  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||    
T  21637930 ggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 25987660 - 25987817
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa-gaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 213  Q
    ||||||||||| ||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  25987660 aaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaa 25987759  T
Q  214 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttacca 271  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  25987760 aggcactagcggggctcgaacccgagttctctcggattcaagacctgtctttttacca 25987817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 2357075 - 2357246
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||  |||||| |||| ||||||   || ||||||||||||| |||||||    
T  2357075 aaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaa 2357173  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357174 ggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 2357246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 7860145 - 7860317
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||||||||||  ||||||||| || | |||||||||| || ||| | ||||||||||||||| ||||||||||| ||  |||||||||||| |||||||    
T  7860145 aaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaa 7860244  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7860245 ggcactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 7860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 36836328 - 36836475
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtc 262  Q
    ||||| |||||  ||||||| |||||||||||||||||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcggattcaagacctgtc 36836475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 118 - 287
Target Start/End: Original strand, 30372682 - 30372851
Alignment:
Q  118 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 217  Q
    |||||||| |||||| |||||  |||||| ||||| | ||||||||||||||||||||||||||| ||||| ||| |||||||||||||  |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  218 actagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  30372782 actagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttg 30372851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 26690287 - 26690115
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||||  | |||||| ||||||||||  |||||||||||||||| |||||||    
T  26690287 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaa 26690188  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
     ||||||||||  ||||||||| | |||||||| ||| || ||||||| ||||||||||||||||||||||||    
T  26690187 agcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttg 26690115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 33066723 - 33066582
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaaga 256  Q
    | |||||| | ||||||||||||| |||||||  ||||||||    
T  33066623 gacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 3201014 - 3200847
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||||||||||  |||| ||||||| ||||||| |||| || ||||| |||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  3201014 aaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcc 283  Q
    ||||||||||  ||||||| || ||||||||  ||||||||| ||||| ||||||||| ||||||||||    
T  3200914 ggcactagcgaggctcgaatccaggttctcttagattcaagatctgtctttttaccac-agaccaagcc 3200847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 558438 - 558548
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||| |||||||    
T  558438 aaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaa 558537  T
Q  215 ggcactagcgg 225  Q
    |||||||||||    
T  558538 ggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 21487282 - 21487111
Alignment:
Q  115 aaaattttaggttgagggg-atggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 213  Q
    ||||||||||| ||||||| |||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  21487282 aaaattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaa 21487183  T
Q  214 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||  || || ||||||| |||   |||  ||| ||||||||||||||||||||||||||| ||| || ||||||    
T  21487182 agataccagtggagctcaaacttaggt--tcttggattcaagacctgtcattttaccacttgactaaacctttg 21487111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 108 - 286
Target Start/End: Original strand, 13047148 - 13047318
Alignment:
Q  108 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 207  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| |||||||| ||| ||||||||||||||||||   |  |||||| |||||||||     
T  13047148 ggtaaggtaaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactta---aggtaattatatttacctcc 13047244  T
Q  208 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    |||||||| ||   |||| |||||||||||| |||||||| |||||||||||||| |||||||   |||||||||||||    
T  13047245 ctccaaagacat--gcggggctcgaacccggattctctcgaattcaagacctgtctttttacc---agaccaagccttt 13047318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 2098939 - 2099011
Alignment:
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttg 2099011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 127 - 280
Target Start/End: Original strand, 4553569 - 4553723
Alignment:
Q  127 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc-actccaaaggcactagcgg 225  Q
    ||||||||||||| ||||||| |||  || |||||||| ||| ||||||||| |||||||||| || ||| |||||||||  |||||||  ||||||| |    
T  4553569 tgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaacactagctg 4553668  T
Q  226 agctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaa 280  Q
    | |||||||| |   ||||||| ||||||||| |||| |||||||| ||||||||    
T  4553669 aactcgaacctgaaatctctcgaattcaagacatgtctttttaccattagaccaa 4553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagacctt 165  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  178 gcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 233  Q
    ||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 35163749 - 35163924
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  35163749 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 35163848  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 290  Q
    |||| ||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35163849 ggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 35163924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 116 - 286
Target Start/End: Original strand, 19686827 - 19686997
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| |||||||||| || ||||||| |||| ||| |||| ||||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  19686827 aaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaag 19686926  T
Q  216 gcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    ||||||| || |||||||||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  19686927 gcactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaaaccttt 19686997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 286
Target Start/End: Original strand, 2711739 - 2711904
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||||||||||||      ||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2711739 aaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2711832  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
     ||||||| || ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2711833 agcactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagccttt 2711904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 20685458 - 20685348
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  20685458 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T
Q  215 ggcactagcgg 225  Q
    |||||||||||    
T  20685358 ggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 17948813 - 17948703
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17948813 aaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaa 17948714  T
Q  215 ggcactagcgg 225  Q
    | |||||||||    
T  17948713 gacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 14496406 - 14496313
Alignment:
Q  194 ttacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttg 14496313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 14505524 - 14505693
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||| ||||| || ||||||  | |||||||  || ||||||||||||| |||||||    
T  14505524 aaaattttaggt-gaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaa 14505621  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
     |||||||||| |||||||  |||| |||||||||||||| || |||  ||||||| ||||||||||||||||    
T  14505622 agcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttg 14505693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 15070246 - 15070152
Alignment:
Q  127 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 221  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||    
T  15070246 tgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 24336718 - 24336633
Alignment:
Q  145 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 230  Q
    |||||||| |||||||| |||| |||||||| | ||||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 30054445 - 30054613
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttg 30054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 20014591 - 20014419
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||    
T  20014591 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaa 20014492  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    || ||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  20014491 ggtactagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttg 20014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 21090236 - 21090076
Alignment:
Q  127 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 226  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||| |||||||||||     
T  21090236 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggg 21090137  T
Q  227 gctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  21090136 gctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttg 21090076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 45324139 - 45323967
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||  || ||||||||||||| |||||||    
T  45324139 aaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaa 45324040  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
     |||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45324039 agcactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttg 45323967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 117 - 287
Target Start/End: Original strand, 30370061 - 30370231
Alignment:
Q  117 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 216  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||     
T  30370061 aattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 30370160  T
Q  217 cactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||| || |||||||||||| |||||||| |||||| || |||| ||||||||||||||||||||||||    
T  30370161 cactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttg 30370231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 12025314 - 12025142
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||| || |||||||||  |||||||||||||||  |||||||    
T  12025314 aaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaa 12025215  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||  || |||||||||| |||||||||| |||||||| ||||  |||||||||||||||||| |||||    
T  12025214 ggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttg 12025142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 115 - 268
Target Start/End: Complemental strand, 4573512 - 4573359
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||| ||| | ||||||||   |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  4573512 aaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 4573413  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcatttta 268  Q
    | || ||| || |||||||||||||||||||||||||||||||||||| |||||    
T  4573412 gacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 116 - 286
Target Start/End: Original strand, 33763254 - 33763424
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| |||||||||| || |||||| ||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| ||||    
T  33763254 aaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaag 33763353  T
Q  216 gcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    |||||||||| |||||||||  | |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  33763354 gcactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaaccttt 33763424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 30850841 - 30850985
Alignment:
Q  117 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 216  Q
    ||||||||| ||||||||||||| |||||||||||  ||| |||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  217 cactagcggagctcgaacccgggttctctcggattcaagacctgt 261  Q
    ||||| ||| ||||||||||| ||||||||||||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 22024235 - 22024128
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 215  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  22024235 aaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaag 22024136  T
Q  216 gcactagc 223  Q
    ||||||||    
T  22024135 gcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 35618104 - 35617942
Alignment:
Q  119 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 218  Q
    ||||||| ||||||||||||  |||||||||| | | |||||||||||||||||||||||||||||||||  ||    ||||||| || ||  |||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaagcta----catttacatccctg-aaaggca 35618010  T
Q  219 ctagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 286  Q
    ||| ||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  35618009 ctaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaaaccttt 35617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 14498078 - 14498182
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||||||||| || |||||||||||||||||||  |||||||||||||||| |||||||    
T  14498078 aaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaa 14498177  T
Q  215 ggcac 219  Q
    |||||    
T  14498178 ggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 15034501 - 15034416
Alignment:
Q  202 acctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||| |||||||||||||||  | ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttg 15034416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 35371756 - 35371833
Alignment:
Q  127 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacc 204  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  35371756 tgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  128 gaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggag 227  Q
    |||||||||||  |||||| ||||| ||||||||||||||   | ||||| ||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  228 ctcgaaccc 236  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 33762539 - 33762646
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    ||||||||||| |||||||||| || |||||||||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| |||    
T  33762539 aaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaa 33762638  T
Q  215 ggcactag 222  Q
    ||||||||    
T  33762639 ggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 17015252 - 17015192
Alignment:
Q  116 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 176  Q
    |||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  17015252 aaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 107691 - 107862
Alignment:
Q  115 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 214  Q
    |||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  107691 aaaattttaggt-gaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  215 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  107790 ggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttg 107862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 6993 - 7136
Alignment:
Q  140 gcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccggg 239  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||  ||||||||||||| || ||||||| ||||||||||  |||||||||||     
T  6993 gcccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccgga 7092  T
Q  240 ttctctcggattcaagacctgtcattttaccactagaccaagcctttg 287  Q
    |||||||   ||| || |||||| ||||||||||| | ||||||||||    
T  7093 ttctctc---ttcgagtcctgtctttttaccacta-aacaagcctttg 7136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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