View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2557_low_52 (Length: 235)
Name: NF2557_low_52
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2557_low_52 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 6368070 - 6368291
Alignment:
| Q |
14 |
caatacaaataatattttttattgcatagagggccaaaaggctcgagaaaattacatcttaacctaacaagggtaacccccgtttgatcagcaactaaca |
113 |
Q |
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| T |
6368070 |
caatacaaataatattttttattgcatagagggtcaaaaggctcgagaaaattacatcttaacctaacgagggtaacccccgtttggtcagcaactaaca |
6368169 |
T |
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| Q |
114 |
agtgcataatttgagccaggcacgactcataacccatcatatttgaaatcatgctacaccccatattggctagtgcatcatcacaagaatttgcctcgcg |
213 |
Q |
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| T |
6368170 |
agtgcataatttgagccaggcacgactcataacccatcatatttgaaatcatgctacaccccatattggccagtgcatcatcacaagaatttgcctcgcg |
6368269 |
T |
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| Q |
214 |
aaaagtgtattgcactttcacc |
235 |
Q |
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| T |
6368270 |
aaaagtgtattgcactttcacc |
6368291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 41566162 - 41566315
Alignment:
| Q |
82 |
aagggtaacccccgtttgatcagcaactaacaagtgcataatttgagccaggcacgactcataacccatcatatttgaaatcatgctacaccccatattg |
181 |
Q |
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| T |
41566162 |
aagggtaacccctgtttggttagcaactaacaagtgcataatttgagtcgagtacgactcataaaccatcatattcaaacccatgctacatccaatatta |
41566261 |
T |
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| Q |
182 |
gctagtgcatcatcacaagaatttgcctcgcgaaaagtgtattgcactttcacc |
235 |
Q |
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| T |
41566262 |
gctagtgcatcggcataagaatttgccttgcgaaaagcgtgttgtactttcacc |
41566315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 10448906 - 10448965
Alignment:
| Q |
86 |
gtaacccccgtttgatcagcaactaacaagtgcataatttgagccaggcacgactcataa |
145 |
Q |
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| T |
10448906 |
gtaacccccgcttgatcagcagctaacaaatggttaatttgagtcagacacgactcataa |
10448965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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