View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2557_low_7 (Length: 514)

Name: NF2557_low_7
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2557_low_7
NF2557_low_7
[»] scaffold0009 (3 HSPs)
scaffold0009 (9-188)||(261218-261397)
scaffold0009 (239-406)||(260999-261162)
scaffold0009 (285-405)||(262425-262542)
[»] chr4 (21 HSPs)
chr4 (9-188)||(54590352-54590531)
chr4 (314-406)||(53477089-53477182)
chr4 (285-404)||(54591560-54591678)
chr4 (239-401)||(54590146-54590304)
chr4 (321-405)||(23454953-23455038)
chr4 (325-405)||(23455709-23455790)
chr4 (321-405)||(52815662-52815747)
chr4 (321-405)||(56556581-56556666)
chr4 (321-404)||(38813554-38813638)
chr4 (321-405)||(55013105-55013189)
chr4 (321-403)||(56557341-56557424)
chr4 (321-405)||(52816439-52816524)
chr4 (321-405)||(38814343-38814428)
chr4 (321-399)||(38982612-38982691)
chr4 (330-406)||(13336863-13336940)
chr4 (334-405)||(9254405-9254477)
chr4 (330-404)||(22881167-22881242)
chr4 (330-404)||(22932831-22932906)
chr4 (314-406)||(20086435-20086528)
chr4 (330-405)||(22882352-22882428)
chr4 (330-405)||(22934016-22934092)
[»] chr5 (23 HSPs)
chr5 (11-188)||(14744431-14744613)
chr5 (242-405)||(14744672-14744831)
chr5 (321-413)||(22870478-22870571)
chr5 (320-405)||(31107930-31108016)
chr5 (321-407)||(20856929-20857016)
chr5 (321-404)||(16533641-16533725)
chr5 (321-404)||(20072121-20072205)
chr5 (321-407)||(20072885-20072972)
chr5 (318-406)||(8654105-8654194)
chr5 (335-407)||(21979001-21979074)
chr5 (321-397)||(22869612-22869689)
chr5 (321-405)||(39181056-39181141)
chr5 (321-406)||(20857563-20857649)
chr5 (321-390)||(21972104-21972173)
chr5 (321-399)||(16532898-16532977)
chr5 (321-399)||(21978033-21978112)
chr5 (321-399)||(36477392-36477471)
chr5 (324-408)||(36476761-36476846)
chr5 (321-404)||(39181812-39181896)
chr5 (284-405)||(8673741-8673859)
chr5 (314-366)||(39402157-39402210)
chr5 (314-406)||(33735311-33735404)
chr5 (325-390)||(8323070-8323136)
[»] chr1 (25 HSPs)
chr1 (9-175)||(2828427-2828593)
chr1 (239-405)||(2828192-2828354)
chr1 (324-409)||(49093036-49093122)
chr1 (321-401)||(25065974-25066055)
chr1 (335-405)||(13295610-13295681)
chr1 (321-399)||(32619389-32619468)
chr1 (321-399)||(46282809-46282888)
chr1 (321-390)||(32622372-32622442)
chr1 (321-404)||(46282071-46282155)
chr1 (325-399)||(50062968-50063043)
chr1 (318-404)||(51935212-51935299)
chr1 (314-399)||(6344260-6344346)
chr1 (324-405)||(13295134-13295216)
chr1 (314-405)||(6345646-6345738)
chr1 (314-403)||(2829548-2829645)
chr1 (316-405)||(32238698-32238788)
chr1 (405-450)||(14987001-14987046)
chr1 (330-406)||(25064931-25065008)
chr1 (285-406)||(28534780-28534898)
chr1 (314-406)||(25414842-25414935)
chr1 (314-405)||(1047497-1047589)
chr1 (284-375)||(29043022-29043110)
chr1 (321-366)||(49093829-49093875)
chr1 (314-406)||(52563649-52563742)
chr1 (314-405)||(12577009-12577101)
[»] chr8 (22 HSPs)
chr8 (314-405)||(38598963-38599055)
chr8 (314-406)||(25288085-25288178)
chr8 (318-405)||(33497629-33497717)
chr8 (314-404)||(7393154-7393245)
chr8 (321-406)||(34665768-34665854)
chr8 (321-403)||(1231527-1231610)
chr8 (321-405)||(34214544-34214630)
chr8 (352-406)||(1232845-1232899)
chr8 (321-405)||(34213763-34213848)
chr8 (314-413)||(4970115-4970216)
chr8 (335-405)||(4463456-4463527)
chr8 (315-397)||(24379006-24379089)
chr8 (324-390)||(34666559-34666626)
chr8 (318-404)||(27437532-27437619)
chr8 (318-379)||(33497041-33497103)
chr8 (284-375)||(20096288-20096379)
chr8 (314-353)||(24377233-24377272)
chr8 (318-404)||(27436563-27436650)
chr8 (314-362)||(7392250-7392299)
chr8 (318-406)||(29574740-29574829)
chr8 (314-405)||(25287791-25287883)
chr8 (314-405)||(36623351-36623443)
[»] scaffold1493 (2 HSPs)
scaffold1493 (314-406)||(591-684)
scaffold1493 (314-405)||(886-978)
[»] chr7 (20 HSPs)
chr7 (314-406)||(7158229-7158322)
chr7 (317-405)||(12643099-12643188)
chr7 (314-406)||(12929285-12929378)
chr7 (314-406)||(12930770-12930863)
chr7 (321-408)||(4227188-4227276)
chr7 (318-405)||(37284108-37284196)
chr7 (318-405)||(37289323-37289411)
chr7 (321-407)||(38643547-38643634)
chr7 (328-403)||(12644156-12644232)
chr7 (321-406)||(4226123-4226209)
chr7 (321-405)||(45915824-45915909)
chr7 (321-405)||(47558029-47558114)
chr7 (321-399)||(22661362-22661441)
chr7 (324-406)||(45914524-45914606)
chr7 (321-405)||(27480763-27480848)
chr7 (321-404)||(27479987-27480071)
chr7 (314-405)||(37563647-37563739)
chr7 (314-375)||(19979980-19980041)
chr7 (318-406)||(31695627-31695716)
chr7 (314-406)||(43937892-43937985)
[»] chr2 (17 HSPs)
chr2 (321-404)||(25623288-25623372)
chr2 (318-406)||(20101768-20101857)
chr2 (321-405)||(20982523-20982608)
chr2 (321-405)||(29957816-29957901)
chr2 (321-404)||(25624449-25624533)
chr2 (285-397)||(19620777-19620886)
chr2 (318-405)||(20103157-20103245)
chr2 (321-404)||(20983277-20983361)
chr2 (327-406)||(24387349-24387429)
chr2 (325-408)||(24388276-24388360)
chr2 (322-404)||(29958564-29958647)
chr2 (314-406)||(23206417-23206510)
chr2 (314-406)||(23678021-23678114)
chr2 (335-406)||(43236502-43236574)
chr2 (328-377)||(21103108-21103158)
chr2 (314-347)||(19619584-19619617)
chr2 (314-405)||(16366962-16367054)
[»] chr6 (13 HSPs)
chr6 (314-405)||(17784394-17784486)
chr6 (321-407)||(33401142-33401229)
chr6 (314-398)||(8427374-8427459)
chr6 (321-404)||(33399966-33400050)
chr6 (321-405)||(4116798-4116883)
chr6 (321-405)||(4117563-4117648)
chr6 (321-405)||(14657225-14657310)
chr6 (321-390)||(1661446-1661516)
chr6 (321-405)||(14656479-14656564)
chr6 (285-404)||(8427200-8427316)
chr6 (314-407)||(5064332-5064426)
chr6 (314-403)||(23291745-23291835)
chr6 (314-406)||(13480206-13480299)
[»] chr3 (23 HSPs)
chr3 (321-405)||(29193009-29193094)
chr3 (321-406)||(32717121-32717207)
chr3 (321-404)||(45279300-45279384)
chr3 (321-406)||(2944682-2944768)
chr3 (321-406)||(22736706-22736792)
chr3 (63-155)||(39711709-39711805)
chr3 (321-390)||(43105850-43105920)
chr3 (321-405)||(1757320-1757405)
chr3 (321-405)||(29192034-29192119)
chr3 (321-404)||(1756550-1756634)
chr3 (321-404)||(11026648-11026732)
chr3 (323-390)||(44476063-44476131)
chr3 (321-399)||(44481969-44482048)
chr3 (321-406)||(2943911-2943997)
chr3 (321-390)||(48188392-48188462)
chr3 (321-405)||(48189115-48189200)
chr3 (321-404)||(43105233-43105317)
chr3 (321-399)||(45278549-45278628)
chr3 (321-399)||(37249204-37249283)
chr3 (70-161)||(11527338-11527433)
chr3 (325-379)||(11025962-11026017)
chr3 (324-378)||(37249817-37249872)
chr3 (284-390)||(22129020-22129123)
[»] scaffold0182 (2 HSPs)
scaffold0182 (318-408)||(14390-14481)
scaffold0182 (318-405)||(13133-13221)
[»] scaffold0347 (2 HSPs)
scaffold0347 (322-404)||(13609-13692)
scaffold0347 (322-402)||(14610-14691)
[»] scaffold0018 (1 HSPs)
scaffold0018 (321-404)||(73109-73193)


Alignment Details
Target: scaffold0009 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 261397 - 261218
Alignment:
Q  9 agcagagagtaaaaatggttttgttcaagtgatgaacataagccacatactttgattttgacgaaaagcacaaaaacaagcacaaactagttaaatgata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  261397 agcagagagtaaaaatggttttgttcaagtgatgaacataagccacacactttgattttaacgaaaagcacaaaaacaagcacaaactaattaaatgata 261298  T
Q  109 atggtagcatctttattaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtgctggtggtgaaac 188  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  261297 atggtagcatctttgttaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtgctgatggtgaaac 261218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 239 - 406
Target Start/End: Complemental strand, 261162 - 260999
Alignment:
Q  239 tatgggtaaaatggtctttgccatccacctaagcaannnnnnnnnaattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagagg 338  Q
    ||||||||||||||||||||||||||||||||||||         |||||||  ||||||||||||| |||||||    |||||||||||||||| ||||    
T  261162 tatgggtaaaatggtctttgccatccacctaagcaaattttttt-aattaggtcgaaaattcaaatgattaatat----ttgcaggggcaaaatgggagg 261068  T
Q  339 attagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||| |||| ||||||||||||||||| |||||||||  |||||||||||| |||||||||||||    
T  261067 attagtaaattcatggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagccta 260999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 262425 - 262542
Alignment:
Q  285 attaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagg 383  Q
    ||||||||||||||| ||||| |||||||    ||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||    
T  262425 attaggatgaaaatttaaatgattaatat----ttgcaggggaaaaatgggaggattagtaagttcagggatgaaaaatcaaatgacctataattacagg 262520  T
Q  384 gatgaaatgtatatttaagcct 405  Q
    ||||||||| ||||||||||||    
T  262521 gatgaaatgcatatttaagcct 262542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 54590531 - 54590352
Alignment:
Q  9 agcagagagtaaaaatggttttgttcaagtgatgaacataagccacatactttgattttgacgaaaagcacaaaaacaagcacaaactagttaaatgata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54590531 agcagagagtaaaaatggttttgttcaagtgatgaacataagccacacactttgattttgacgaaaagcacaaaaacaagcacaaactaattaaatgata 54590432  T
Q  109 atggtagcatctttattaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtgctggtggtgaaac 188  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  54590431 atggtagcatctttgttaatgtttaaaagcttcaagtctttgttgaaggagagggagtgggtgggtgctgatggtgaaac 54590352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 53477089 - 53477182
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||  || ||||||||| |||||||||||||    
T  53477089 atatttgcaggggcaaaatgggaggattagtaagttcagagatgaaaaatcaaatgacctataattgcagagatgaaatgcatatttaagccta 53477182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 404
Target Start/End: Original strand, 54591560 - 54591678
Alignment:
Q  285 attaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagg 383  Q
    ||||||| ||||||||||||| ||||||| |  |||||||||||||||| |||| |||||||||||||| |||||||||||||||  ||||||||  |||    
T  54591560 attaggacgaaaattcaaatgattaatattt--ttgcaggggcaaaatgggaggtttagtaagttcagggatgaaaaatcaaatgatctataattgcagg 54591657  T
Q  384 gatgaaatgtatatttaagcc 404  Q
    ||||||||| |||||||||||    
T  54591658 gatgaaatgcatatttaagcc 54591678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 239 - 401
Target Start/End: Complemental strand, 54590304 - 54590146
Alignment:
Q  239 tatgggtaaaatggtctttgccatccacctaagcaannnnnnnnnaattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagagg 338  Q
    ||||||||||||||||||||||||||||||||||||         |||||||| ||||||||||||| |||||||    ||| || |||||||||  ||     
T  54590304 tatgggtaaaatggtctttgccatccacctaagcaaattttttt-aattaggacgaaaattcaaatgattaatat----ttgtagaggcaaaatggaaga 54590210  T
Q  339 attagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaa 401  Q
    |||||||||||||  |||||||||||||||| |||||||||  |||||||||||| ||||||||    
T  54590209 attagtaagttcaaagatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaa 54590146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 23455038 - 23454953
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  23455038 caggggcaaaatgggatgattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 23454953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 23455709 - 23455790
Alignment:
Q  325 ggcaaaatgagaggattagtaagttcagga-tgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  23455709 ggcaaaatgggaggattagtaagctcaggaatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 23455790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 52815747 - 52815662
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  52815747 caggggcaaaatgaaaggattagtaagttcagggataaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 52815662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 56556666 - 56556581
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  56556666 caggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 56556581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 38813638 - 38813554
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  38813638 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 38813554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 55013105 - 55013189
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcaggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||| | ||||||||||||    
T  55013105 caggggcaaactgggaggattagtaagctcaggatgaaaaatcaaatagcctataattacatggatgaaaagcatatttaagcct 55013189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 56557341 - 56557424
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagc 403  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| | ||||||||||    
T  56557341 caggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattagagggatgaaaagcatatttaagc 56557424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 52816439 - 52816524
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||   ||||||||||||    
T  52816439 caggggcaaaatggaaggattagtaagttcagagatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 52816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 38814343 - 38814428
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||| ||||| | |||||||| | ||||||||||||    
T  38814343 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctaaaattacaaggatgaaaagcatatttaagcct 38814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 38982612 - 38982691
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||  |||||||||| | ||||||    
T  38982612 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 38982691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 13336863 - 13336940
Alignment:
Q  330 aatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||| ||||||||||||||||||| ||||||  ||||||| |||||| ||  |||||||||||| |||||||||||||    
T  13336863 aatgggaggattagtaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatatttaagccta 13336940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 9254477 - 9254405
Alignment:
Q  334 agaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||||| ||||||||  |||||||||||||| ||  |||||||||||| |||||| |||||    
T  9254477 agaggattagtaagttcaaggatgaaatttcaaatggcctatatttgcagggatgaaatgcatattttagcct 9254405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 22881242 - 22881167
Alignment:
Q  330 aatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||| |||||||||||| | ||| |||||||  |||||||||||||| ||| |||||||||||| |||||| ||||    
T  22881242 aatgggaggattagtaaatgcagagatgaaatttcaaatggcctatatttacagggatgaaatgcatattttagcc 22881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 22932906 - 22932831
Alignment:
Q  330 aatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||| |||||||||||| | ||| |||||||  |||||||||||||| ||| |||||||||||| |||||| ||||    
T  22932906 aatgggaggattagtaaatgcagagatgaaatttcaaatggcctatatttacagggatgaaatgcatattttagcc 22932831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 20086528 - 20086435
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||| ||||| ||||||| |||||| |||||| || ||||   |||||||||||||    
T  20086528 atatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttatagagacgaaagacatatttaagccta 20086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 22882352 - 22882428
Alignment:
Q  330 aatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||| |||||||| |||||||||| ||||||  ||||||| |||||| ||  |||||||||||| |||||| |||||    
T  22882352 aatgggaggattattaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatattttagcct 22882428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 22934016 - 22934092
Alignment:
Q  330 aatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||| |||||||| |||||||||| ||||||  ||||||| |||||| ||  |||||||||||| |||||| |||||    
T  22934016 aatgggaggattattaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatattttagcct 22934092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 14744431 - 14744613
Alignment:
Q  11 cagagagtaaaaatggttttgttcaagtgatgaacataagccacatactttgattttgacgaaaagcacaaaaacaagcacaaactagttaaatgataat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  14744431 cagagagtaaaaatggttttgttcaagtgatgaacataagccacacactttgattttgacgaaaagcacaaaaacaagcacaaactaattatatgataat 14744530  T
Q  111 ggtagcatcttta-----ttaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtgctggtggtgaaac 188  Q
    |||||||||||||     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14744531 ggtagcatctttaatttgttaatgtttaaaagcttcaagtccttgttgaaggagagggagtgagtgggtgctggtggtgaaac 14744613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 14744672 - 14744831
Alignment:
Q  242 gggtaaaatggtctttgccatccacctaagcaannnnnnnnnaattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggatt 341  Q
    ||||||||||||||||||| |||||||||||||         |||||||| ||||||||||||| |||||||    |||||||||||||||| |||||||    
T  14744672 gggtaaaatggtctttgccgtccacctaagcaaattttttt-aattaggacgaaaattcaaatgattaatat----ttgcaggggcaaaatgggaggatt 14744766  T
Q  342 agtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||| ||||||||||||||||| | |||||||  |||||||||||| ||||||||||||    
T  14744767 agtaagttcagggatgaaaaatcaaatgacatataattgcagggatgaaatgcatatttaagcct 14744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 22870478 - 22870571
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctatatatat 413  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  22870478 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcctatatatat 22870571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 31108016 - 31107930
Alignment:
Q  320 gcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  31108016 gcaggggtaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 31107930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 20857016 - 20856929
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| | ||||||||||||||    
T  20857016 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcctat 20856929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 16533641 - 16533725
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||    
T  16533641 caggggcaaaatggaaggattaataagttcagagatgaaaaatcaaacggcctataattatagggatgaaaagcatatttaagcc 16533725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 20072205 - 20072121
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| || ||||||| | |||||||||||    
T  20072205 caggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagagatgaaaagcatatttaagcc 20072121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 20072885 - 20072972
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||| |||||||||| | ||||||||||||||    
T  20072885 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaagcatatttaagcctat 20072972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 8654194 - 8654105
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||| ||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||   |||||||||||||    
T  8654194 ttgcagggacaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagccta 8654105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 21979001 - 21979074
Alignment:
Q  335 gaggattagtaagttc-aggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    |||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||| ||||||||||||||    
T  21979001 gaggattagtaagttcgaggatgaaaaatcaaatggcttataattgcagggatgaaatgcatatttaagcctat 21979074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 22869689 - 22869612
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatat 397  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  22869689 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaaggatgaaatgcatat 22869612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 39181141 - 39181056
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||| | ||||||||||||    
T  39181141 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcttataattacagggatgaaaagcatatttaagcct 39181056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 20857563 - 20857649
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagga-tgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||| ||||||||||||| | |||| |||||||||||| |||||||||||| | |||||||| | |||||||||||||    
T  20857563 caggggcaaaatgggaggattagtaagcttaggaatgaaaaatcaaacggcctataattacatggatgaaaagcatatttaagccta 20857649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 21972173 - 21972104
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcaggatgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    |||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  21972173 caggagcaaaatgggaggattagtaagctgaggatgaaaaatcaaatggcccataattacagggatgaaa 21972104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 16532977 - 16532898
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||||||  ||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| | ||||||    
T  16532977 caggggcaaaatggaaggattaataagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 16532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 21978033 - 21978112
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||| || ||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||| | ||||||    
T  21978033 caggggcaaagtgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 21978112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 36477392 - 36477471
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||  |||||||||| | ||||||    
T  36477392 caggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 36477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 36476846 - 36476761
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctata 408  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||  |||||||||| | |||||| | ||||||    
T  36476846 gggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattttaccctata 36476761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 39181812 - 39181896
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| | |||||||||| |||||| |||   |||||||||||    
T  39181812 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggattaaaaacatatttaagcc 39181896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 8673741 - 8673859
Alignment:
Q  284 aattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatag 382  Q
    ||||||||||||| |||||||| |||| |     ||||| |||||||||| ||| ||||| ||||||| ||||||||  |||||||||||||| ||  ||    
T  8673741 aattaggatgaaatttcaaatgattaacaa----ttgcaagggcaaaatgggagaattagcaagttcaaggatgaaatttcaaatggcctatatttgcag 8673836  T
Q  383 ggatgaaatgtatatttaagcct 405  Q
    |||||||||| |||||| |||||    
T  8673837 ggatgaaatgcatattttagcct 8673859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 39402157 - 39402210
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaa 366  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  39402157 atatttgcaggggcaaaatgggaggattagtaagtccagggatgaaaaatcaaa 39402210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 33735404 - 33735311
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||| || | ||  ||||||||||| |||||| | |||||||||||||||||||| || |||||| ||||   |||||||||||||    
T  33735404 atatttgcagggacagattggaaggattagtaatttcagggacgaaaaatcaaatggcctatatttgtagggacgaaagacatatttaagccta 33735311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 8323136 - 8323070
Alignment:
Q  325 ggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    |||||||||  ||||||||||| |||| ||| ||||| ||||||| |||||| ||||||||||||||    
T  8323136 ggcaaaatggaaggattagtaacttcatggacgaaaattcaaatgacctatatttatagggatgaaa 8323070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 2828593 - 2828427
Alignment:
Q  9 agcagagagtaaaaatggttttgttcaagtgatgaacataagccacatactttgattttgacgaaaagcacaaaaacaagcacaaactagttaaatgata 108  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2828593 agcagagagtaaaaacagttttgttcaagtgatgaacataagccacacactttgattttgacgaaaagcacaaaaacaagcacaaactaattaaatgata 2828494  T
Q  109 atggtagcatctttattaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtg 175  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828493 atggtagcatctttgttaatgtttaaaagcttcaagtccttgttgaaggagagggagtgggtgggtg 2828427  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 2828354 - 2828192
Alignment:
Q  239 tatgggtaaaatggtctttgccatccacctaagcaannnnnnnnnaattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagagg 338  Q
    ||||||||||||||||||||||||||||||||||||         ||||| || ||||||||||||| |||||||    |||||| ||||||||   |||    
T  2828354 tatgggtaaaatggtctttgccatccacctaagcaaattttttt-aattaagacgaaaattcaaatgattaatat----ttgcagaggcaaaatagaagg 2828260  T
Q  339 attagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||| | |||||||||||||||||  ||||||||  | |||||||||| ||||||||||||    
T  2828259 attagtaagtttatggatgaaaaatcaaatgatctataattgcaaggatgaaatgcatatttaagcct 2828192  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 49093122 - 49093036
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctatat 409  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | || |||||||||||||    
T  49093122 gggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatgtttaagcctatat 49093036  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 25065974 - 25066055
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaa 401  Q
    |||||| ||||||  |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  25065974 caggggtaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcttataattatagggatgaaatgcatatttaa 25066055  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 13295610 - 13295681
Alignment:
Q  335 gaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13295610 gagggttagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 13295681  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 32619468 - 32619389
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||| | ||||||    
T  32619468 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 32619389  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 46282809 - 46282888
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | ||||||    
T  46282809 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 46282888  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 32622372 - 32622442
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||    
T  32622372 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaa 32622442  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 46282155 - 46282071
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||   |||||||||||    
T  46282155 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaaacatatttaagcc 46282071  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 50062968 - 50063043
Alignment:
Q  325 ggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | ||||||    
T  50062968 ggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 50063043  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 51935212 - 51935299
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||||| ||||||||| ||| ||||| ||||||||||||||| | |||||||| | |||||||| | |||||||||||    
T  51935212 ttgcaggggcaaaatgggaggattagaaagctcagggatgaaaaatcaaatgacatataattacatggatgaaaagcatatttaagcc 51935299  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 6344346 - 6344260
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||||  ||||||| ||  |||||| |||||||||||| ||||||    
T  6344346 atatttgcaagggcaaaatgggaggattagtaagttcatggatgaaatttcaaatgacccctaattacagggatgaaatgcatattt 6344260  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 405
Target Start/End: Complemental strand, 13295216 - 13295134
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagga-tgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||  |||||||||||| |||||  |||||||||||||| |||||||||| |||| ||||||| ||||||||||||    
T  13295216 gggcaaaatggaaggattagtaagctcaggggtgaaaaatcaaatgacctataattacaggggtgaaatgcatatttaagcct 13295134  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 6345646 - 6345738
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||| ||  |||||  |||||||||||| |||||| |||||    
T  6345646 atatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcagggatgaaatgcatattttagcct 6345738  T

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Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 2829548 - 2829645
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttc-aggatgaaaa-------atcaaatggcctataattatagggatgaaatgtatatttaagc 403  Q
    ||||||||||||| |||||| ||||||||||||| || ||||||||||       |||||||| ||||||||| ||||||||||||| ||||||||||    
T  2829548 atatttgcaggggtaaaatgggaggattagtaagctcaaggatgaaaaatcaaatatcaaatgacctataattgtagggatgaaatgcatatttaagc 2829645  T

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Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 32238788 - 32238698
Alignment:
Q  316 atttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||| ||| ||||||||| ||||||||||||||||| ||||||||  |||||| ||||||| ||  |||||||||||| |||||| |||||    
T  32238788 atttacagaggcaaaatgggaggattagtaagttcagggatgaaatttcaaatagcctatatttgcagggatgaaatgcatattttagcct 32238698  T

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Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 14987001 - 14987046
Alignment:
Q  405 tatatatatttccggtcaatgacttactaaacatccagtaaaatag 450  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  14987001 tatatatatttatggtcaatgacttactaaacatccagtaaaatag 14987046  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 25065008 - 25064931
Alignment:
Q  330 aatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||| ||||||||||||| ||||| ||||||||||||||  |||||||||  |||||||||||| |||||||| ||||    
T  25065008 aatgggaggattagtaagatcagggatgaaaaatcaaattacctataattgcagggatgaaatgcatatttaatccta 25064931  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 28534780 - 28534898
Alignment:
Q  285 attaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagg 383  Q
    ||||||||||||||||||||| || |   |||||||||| || ||||||  |||||||||||||||| ||||||||  ||||||| |||||| ||| | |    
T  28534780 attaggatgaaaattcaaatgattta---atatttgcagaggtaaaatggaaggattagtaagttcagggatgaaatttcaaatgccctatatttaca-g 28534875  T
Q  384 gatgaaatgtatatttaagccta 406  Q
     | |||||| |||||||||||||    
T  28534876 aacgaaatgcatatttaagccta 28534898  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 25414935 - 25414842
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||| | ||  ||||||||||| ||||| || ||||| |||||||||||||| || |||||| ||||   |||||||||||||    
T  25414935 atatttgcaggggcagattggaaggattagtaacttcagagaagaaaattcaaatggcctatatttgtagggacgaaagacatatttaagccta 25414842  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 1047497 - 1047589
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||| | ||  ||||||||||| ||||| || ||||| ||||||| |||||| ||| ||||||||||   ||||||||||||    
T  1047497 atatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatgacctatatttacagggatgaaagacatatttaagcct 1047589  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 29043022 - 29043110
Alignment:
Q  284 aattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctata 375  Q
    ||||||||| |||| ||||||| |||||||    ||||||||||| | ||| ||||||||||| |||| ||| ||||| ||||||||||||||    
T  29043022 aattaggatcaaaagtcaaatgattaatat----ttgcaggggcagattgaaaggattagtaacttcagggacgaaaattcaaatggcctata 29043110  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 49093829 - 49093875
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaa 366  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||    
T  49093829 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaa 49093875  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 52563742 - 52563649
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttc-aggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||| ||||||||| ||||||||||||  || |||||||||   |||||  |||||| ||  |||||||||||| |||||| ||||||    
T  52563742 atatttgcagtggcaaaatgggaggattagtaacctcaaggatgaaattccaaataccctatatttgcagggatgaaatgcatattttagccta 52563649  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 12577101 - 12577009
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||| | ||| | ||||||||| ||||  || ||||| |||||||||||||| ||| ||||| ||||   ||||||||||||    
T  12577101 atatttgcaggggcagattgaaatgattagtaacttcatagacgaaaattcaaatggcctatatttacagggacgaaagacatatttaagcct 12577009  T

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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 38599055 - 38598963
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  38599055 atatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 38598963  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 25288085 - 25288178
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  || ||||||||| |||||||||||||    
T  25288085 atatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagccta 25288178  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 33497629 - 33497717
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||| | ||||||||||||    
T  33497629 ttgcaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaatgccctataattacagggatgaaaagcatatttaagcct 33497717  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 7393154 - 7393245
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||| ||||||||||    
T  7393154 atatttgcagggataaaatgggaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgtctatttaagcc 7393245  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 34665854 - 34665768
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||||    
T  34665854 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagccta 34665768  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 1231610 - 1231527
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagc 403  Q
    |||||| |||||| ||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  1231610 caggggtaaaatgggaggattagtaagctcatggatgaaaaatcaaagggcctataattgtagggatgaaatgcatatttaagc 1231527  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 34214544 - 34214630
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagga--tgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  ||||||||||||||||||   |||||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  34214544 caggggcaaaatggaaggattagtaagttcagggattgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 34214630  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 1232845 - 1232899
Alignment:
Q  352 ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  1232845 ggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagccta 1232899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 34213848 - 34213763
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||  ||||||||||||| ||||| ||||||||||||| |||||||||||  |||||||||| | ||||||||||||    
T  34213848 caggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 34213763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 4970216 - 4970115
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc-tatatat 411  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||| ||  |||||  |||||||||||| |||||| |||| |||||||    
T  4970216 atatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcagggatgaaatgcatattttagccatatatat 4970117  T
Q  412 at 413  Q
    ||    
T  4970116 at 4970115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 4463456 - 4463527
Alignment:
Q  335 gaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||||||| ||||||  |||||||||||||| ||  |||||||||||| ||||||||||||    
T  4463456 gaggattagtaagttcagggatgaaatttcaaatggcctatacttgcagggatgaaatgcatatttaagcct 4463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 24379006 - 24379089
Alignment:
Q  315 tatttgcaggggcaaaatgagaggattagtaagttc-aggatgaaaaatcaaatggcctataattatagggatgaaatgtatat 397  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||| ||  |||||  |||||||||||| ||||    
T  24379006 tatttgcaggggcaaaataggaggattagtaagttcaaggatgaaatatcaaatgacccctaattgcagggatgaaatgcatat 24379089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 34666559 - 34666626
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  34666559 gggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagcgatgaaa 34666626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 27437532 - 27437619
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||| |||||||||| | ||||||||| |||||| | ||||| ||||| |||||||| ||  |||||||||||| |||||||||||    
T  27437532 ttgcagtggcaaaatgaaaagattagtaacttcagggacgaaaattcaaacggcctatatttgcagggatgaaatgcatatttaagcc 27437619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 33497103 - 33497041
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagga-tgaaaaatcaaatggcctataatta 379  Q
    ||||| ||||||||||  |||||||||||||||| || |||||||||||||| ||||||||||    
T  33497103 ttgcaagggcaaaatggaaggattagtaagttcaagaatgaaaaatcaaatgacctataatta 33497041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 20096288 - 20096379
Alignment:
Q  284 aattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctata 375  Q
    ||||||||  |||||||||||| |||| ||||||||||| ||||| | ||  ||||||||||| |||| ||| ||||| ||||||||||||||    
T  20096288 aattaggaccaaaattcaaatgattaa-atatatttgcatgggcagattggaaggattagtaacttcagggacgaaaattcaaatggcctata 20096379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 24377272 - 24377233
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg 353  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  24377272 atatttgcaggggaaaaatgggaggattagtaagttcagg 24377233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 27436650 - 27436563
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||| |||||||||| | ||||||||| |||||| | ||||| ||||| | |||||| ||  |||||||||||| |||||||||||    
T  27436650 ttgcagtggcaaaatgaaaagattagtaacttcagggacgaaaattcaaacgacctatatttgcagggatgaaatgcatatttaagcc 27436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 7392299 - 7392250
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaat 362  Q
    ||||||||||||  |||||| ||||||||||||||||| |||||||||||    
T  7392299 atatttgcagggataaaatgggaggattagtaagttcagggatgaaaaat 7392250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 29574829 - 29574740
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||  ||||||  |||||||||||||| ||| ||||||  ||||||| |||||| ||  |||||||||||| |||||| ||||||    
T  29574829 ttgcagggaaaaaatggaaggattagtaagtttagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatattttagccta 29574740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 25287883 - 25287791
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||| ||||| |||||||||| ||| ||| ||||| ||||   ||||||||||||    
T  25287883 atatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggccaatatttacagggacgaaagacatatttaagcct 25287791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 36623443 - 36623351
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||| ||| | ||| ||||||||||| |||| ||| ||||| |||||||||||||| ||  ||||| ||||   ||||||||||||    
T  36623443 atatttgcaggagcagattgaaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaaaacatatttaagcct 36623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 684 - 591
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  || ||||||||| |||||||||||||    
T  684 atatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagccta 591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 886 - 978
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||| ||||| |||||||||| ||| ||| ||||| ||||   ||||||||||||    
T  886 atatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggccaatatttacagggacgaaagacatatttaagcct 978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 7158322 - 7158229
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  7158322 atatttacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaatggcctataattgtagggatgaaatgcatatttaagccta 7158229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 12643188 - 12643099
Alignment:
Q  317 tttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  12643188 tttgcaggggtaaaatgggaggattagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 12643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 12929378 - 12929285
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||  |||||||||||| |||||||||||||    
T  12929378 atatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatagcctatatttgcagggatgaaatgcatatttaagccta 12929285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 12930863 - 12930770
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||  |||||||||||| |||||||||||||    
T  12930863 atatttgcaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagccta 12930770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 4227188 - 4227276
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctata 408  Q
    ||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  4227188 cagggacaaaatgggaggattagtaagctcaaggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcctata 4227276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 37284196 - 37284108
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  37284196 ttgcaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcct 37284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 37289323 - 37289411
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||| | ||||||||||||    
T  37289323 ttgcaggggcaaaatgggaggattagtaagctcagggatgaaaaaccaaatggcctataattacagggatgaaaagcatatttaagcct 37289411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 38643634 - 38643547
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  38643634 caggagcaaaatgggaggattagtaaggtcaaggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcctat 38643547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 12644156 - 12644232
Alignment:
Q  328 aaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagc 403  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  12644156 aaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctgtaattatagggatgaaatgcatatttaagc 12644232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 4226209 - 4226123
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||  |||||||||||| ||| || |||| |||||||||||||||||||| |||||||||||| |||||||||||||    
T  4226209 caggggcaaaatggaaggattagtaagctcatggttgaagaatcaaatggcctataattacagggatgaaatgcatatttaagccta 4226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 45915824 - 45915909
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||| |||||  ||||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  45915824 caggggtaaaataggaggattagtaagcttagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 45915909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 47558114 - 47558029
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||||||| || ||||||||| ||||||||||||    
T  47558114 caggggcaaaatgggaggattagtaaactcagggatgaaaaatcaaatagcctataattaaagagatgaaatgcatatttaagcct 47558029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 22661441 - 22661362
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| | ||||||    
T  22661441 caggggcaaaatggaaggattagtaagttcaaggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 22661362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 45914606 - 45914524
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  45914606 gggcaaaatgagag-attagtaagcttagggatgaaaaatcaaatggcctataattacagagatgaaatgcatatttaagccta 45914524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 27480763 - 27480848
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||  ||| ||||||||||||||| |||||||||||| ||||||||||   ||||||||||||    
T  27480763 caggggcaaaatggaaggattagtaaaatcaaggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 27480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 27480071 - 27479987
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||  ||||||||||||| ||||| ||||||||||||  |||||||||||  |||||||||| | |||||||||||    
T  27480071 caggggcaaaataggaggattagtaagctcagggatgaaaaatcaagcggcctataattgcagggatgaaaagcatatttaagcc 27479987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 37563647 - 37563739
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||||| ||  ||||||||||| |||| ||| ||||| |||||||||||||| ||| ||||| ||||   ||||||||||||    
T  37563647 atatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttacagggacgaaagacatatttaagcct 37563739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 19980041 - 19979980
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcaggatgaaaaatcaaatggcctata 375  Q
    |||||||||  |||||||||  | ||||||||| ||||||||||||| ||||||| ||||||    
T  19980041 atatttgcaacggcaaaatggaatgattagtaacttcaggatgaaaattcaaatgacctata 19979980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 31695627 - 31695716
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||  ||||||  |||||||||||||| ||| ||||||  ||||||| |||||| ||  |||||||||||| |||||| ||||||    
T  31695627 ttgcagggaaaaaatggaaggattagtaagtttagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatattttagccta 31695716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 43937985 - 43937892
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||||||||| ||||||| |||||| ||| | ||| ||||   |||||||||||||    
T  43937985 atatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttacaaggacgaaagacatatttaagccta 43937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 25623372 - 25623288
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25623372 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattatagggatgaaatgcatatttaagcc 25623288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 20101857 - 20101768
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||    
T  20101857 ttgcaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagccta 20101768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 20982608 - 20982523
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  20982608 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 20982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 29957901 - 29957816
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  29957901 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 29957816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 25624449 - 25624533
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||    
T  25624449 caggggaaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcc 25624533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 19620777 - 19620886
Alignment:
Q  285 attaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagg 383  Q
    ||||||||||||||||||||| |||||||    ||||||||||||||||  |||||||||||||||| ||||||||  ||||||| |||||| || ||||    
T  19620777 attaggatgaaaattcaaatgattaatat----ttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacctatatttgtagg 19620872  T
Q  384 gatgaaatgtatat 397  Q
    || |||||| ||||    
T  19620873 gacgaaatgcatat 19620886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 20103157 - 20103245
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||| |||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||| | ||||||||||||    
T  20103157 ttgcatgggcaaaatgggaggattagtaagctcagggatgaaaaatctaatggcctataattacagggataaaaagcatatttaagcct 20103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 20983277 - 20983361
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| || ||||||||| |||||||||| | |||||||||||    
T  20983277 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggtctataattacagggatgaaaagcatatttaagcc 20983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 24387429 - 24387349
Alignment:
Q  327 caaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||  |||||||||||| |||||||||||||    
T  24387429 caaaatgggaggattagtaagctcagggatgaaaaattaaatggcctataattgcagggatgaaatgcatatttaagccta 24387349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 24388276 - 24388360
Alignment:
Q  325 ggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctata 408  Q
    |||||||||  |||||||||||| ||||| |||||||||||||| || |||||||  |||||||||||| |||||||||||||||    
T  24388276 ggcaaaatggaaggattagtaagctcagggatgaaaaatcaaattgcttataattgcagggatgaaatgcatatttaagcctata 24388360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 29958564 - 29958647
Alignment:
Q  322 aggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||  ||||||||||| ||||||||||   |||||||||||    
T  29958564 aggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacagcctataattacagggatgaaaaacatatttaagcc 29958647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 23206417 - 23206510
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttc-aggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||  ||||||| |||||| ||  |  |||||||||| ||||| ||||||    
T  23206417 atatttgcagtggcaaaatgagaggattagtaacttcaaggatgaaatttcaaatgccctatatttgcaaagatgaaatgtctattttagccta 23206510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 23678021 - 23678114
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttc-aggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||  ||||||| |||||| ||  |  |||||||||| ||||| ||||||    
T  23678021 atatttgcagtggcaaaatgagaggattagtaacttcaaggatgaaatttcaaatgccctatatttgcaaagatgaaatgtctattttagccta 23678114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 43236574 - 43236502
Alignment:
Q  335 gaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||||||| ||||||  |||||||||||||| ||  |||||| ||||| |||||| ||||||    
T  43236574 gaggattagtaagttcagggatgaaatttcaaatggcctatatttgcagggataaaatgcatattttagccta 43236502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 21103158 - 21103108
Alignment:
Q  328 aaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataat 377  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||||||||||    
T  21103158 aaaatgaaaggattagtaagttcagggatgaaaaaccaaacggcctataat 21103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 19619617 - 19619584
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaag 347  Q
    |||||||||||||||||||| |||||||||||||    
T  19619617 atatttgcaggggcaaaatgggaggattagtaag 19619584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 16367054 - 16366962
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||| ||||| ||||||| |||||| ||| ||||| ||||   ||||||||||||    
T  16367054 atatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaagacatatttaagcct 16366962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 17784394 - 17784486
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||| | ||||||||||||    
T  17784394 atatttgcaggggcaaaatgggaggattagtaagttcatggatgaaaaatcaaatggcctatcattgcagggatgaaaagcatatttaagcct 17784486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 33401142 - 33401229
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||| | ||||||||||||||    
T  33401142 caggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcctat 33401229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 8427374 - 8427459
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatt 398  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||  |||||||||||| |||||    
T  8427374 atatttgcaggggcaaaatgggaggattagtaagtccagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatt 8427459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 33400050 - 33399966
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  33400050 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 33399966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 4116883 - 4116798
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||   ||||||||||||    
T  4116883 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4116798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 4117563 - 4117648
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||   ||||||||||||    
T  4117563 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4117648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 14657225 - 14657310
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||| ||||| || |||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  14657225 caggggcaaaatggaaggattagtaaggtcagggataaaaaatcaaacggcctataattatagggatgaaaagcatatttaagcct 14657310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 1661446 - 1661516
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    |||||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  1661446 caggggtaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaa 1661516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 14656564 - 14656479
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||||  ||||||||||||| ||||| |||||||||||||  ||||||||||  |||||||||| | ||||||||||||    
T  14656564 caggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacagcctataattgcagggatgaaaagcatatttaagcct 14656479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 404
Target Start/End: Complemental strand, 8427316 - 8427200
Alignment:
Q  285 attaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagg 383  Q
    |||||||||||||||||| || |||||||    |||||||||||||||| |||||||||||| || || || ||||| ||||||| |||||| ||  | |    
T  8427316 attaggatgaaaattcaactgattaatat----ttgcaggggcaaaatgggaggattagtaacttgagagacgaaaattcaaatgacctatatttgcaag 8427221  T
Q  384 gatgaaatgtatatttaagcc 404  Q
    |||||||   |||||||||||    
T  8427220 gatgaaagacatatttaagcc 8427200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 5064426 - 5064332
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctat 407  Q
    ||||||||||||||||| || |||||||||||| |||| ||| ||||| ||||||| | |||| ||| ||||| ||||   ||||||||||||||    
T  5064426 atatttgcaggggcaaattgggaggattagtaacttcagggacgaaaattcaaatgacttatatttacagggacgaaagacatatttaagcctat 5064332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 23291835 - 23291745
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagc 403  Q
    ||||||||||||||| | ||  ||||||||||| |||||| ||||||| |||||||||||||| || |||||| ||||   ||||||||||    
T  23291835 atatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatggcctatatttgtagggacgaaagacatatttaagc 23291745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 13480299 - 13480206
Alignment:
Q  314 atatttgcaggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||||| | ||  ||||||||||| |||| ||| ||||| |||||||||||||| ||  ||||| ||||   |||||||||||||    
T  13480299 atatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagccta 13480206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 29193009 - 29193094
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  29193009 caggggcgaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 29193094  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 32717121 - 32717207
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||  |||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  32717121 caggggcaaaatggaaggattagtaagtttagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagccta 32717207  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 45279300 - 45279384
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  45279300 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 45279384  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 2944682 - 2944768
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||||    
T  2944682 caggggcaaaatggatggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagccta 2944768  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 22736706 - 22736792
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagccta 406  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||   |||||||||||||    
T  22736706 caggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagccta 22736792  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 39711709 - 39711805
Alignment:
Q  63 attttgacgaaaagcacaaaa-acaagcacaaactagttaaatgataatggtagcatct---ttattaatgtttaaaagcttcaagtccttgttgaa 155  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||   ||| |||| ||||||| ||||||||||||||||||    
T  39711709 attttaacgaaaagcacaaaaaacaagcacaaactaattaaatgataattgtagcatctttgttactaatatttaaaaacttcaagtccttgttgaa 39711805  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 43105850 - 43105920
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  43105850 caggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaa 43105920  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 1757320 - 1757405
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||   ||||||||||||    
T  1757320 caggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 1757405  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 29192119 - 29192034
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagga-tgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    ||||||||||| |  |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  29192119 caggggcaaaacggaaggattagtaagctcaggaatgaaaaatcaaatggcctataattacagggatgaaatgcatatttcagcct 29192034  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 1756634 - 1756550
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||  ||||||||||||    
T  1756634 caggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacaaggatgaaaaatatatttaagcc 1756550  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 11026648 - 11026732
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  11026648 caggggcaaaatggaaggattggtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 11026732  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 44476131 - 44476063
Alignment:
Q  323 ggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  44476131 ggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcccataattacagggatgaaa 44476063  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 44481969 - 44482048
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||| | ||||||    
T  44481969 caggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 44482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 2943997 - 2943911
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcaggatgaaaaatcaaatggcctataattatagggat-gaaatgtatatttaagccta 406  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| |||||||||||  |||||| |||| | |||||||||||||    
T  2943997 caggggcaaaataggaggattagtaagctcaggatgaaaaatcaaacggcctataattgcagggatagaaaagcatatttaagccta 2943911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 48188462 - 48188392
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaa 390  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  48188462 caggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaa 48188392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 48189115 - 48189200
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||| |||||||||||| | |||||||| | ||||||||||||    
T  48189115 caggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaacggcctataattacaaggatgaaaagcatatttaagcct 48189200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 43105317 - 43105233
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| | ||||| ||   |||||||||||    
T  43105317 caggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacaaggatgtaaaacatatttaagcc 43105233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 45278628 - 45278549
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    |||||||||||||  ||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||| | ||||||    
T  45278628 caggggcaaaatggaaggattagtaaattcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 45278549  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 37249283 - 37249204
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatattt 399  Q
    ||||||||||||| |||||||| |||| ||||| ||||||||||||| |||||||||||  |||||||||| | ||||||    
T  37249283 caggggcaaaatgggaggattaataagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 37249204  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 11527338 - 11527433
Alignment:
Q  70 cgaaaagcacaaaaacaagcacaaactagttaaatgataatggtagcatctttattaa----tgtttaaaagcttcaagtccttgttgaaggagag 161  Q
    ||||||||||| ||||||||| |||| | |||||||| ||||| ||||| ||| ||||    | ||| |||||||||||||||||||||| |||||    
T  11527338 cgaaaagcacacaaacaagcataaaccaattaaatgacaatggaagcatatttgttaaaatttattttaaagcttcaagtccttgttgaatgagag 11527433  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 11026017 - 11025962
Alignment:
Q  325 ggcaaaatgagaggattagtaagttca-ggatgaaaaatcaaatggcctataatta 379  Q
    |||||||||  |||||||||||||||| ||||||||||||||| ||| ||||||||    
T  11026017 ggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcttataatta 11025962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 37249817 - 37249872
Alignment:
Q  324 gggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataatt 378  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||||| |||||||||||    
T  37249817 gggcagaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataatt 37249872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 390
Target Start/End: Complemental strand, 22129123 - 22129020
Alignment:
Q  284 aattaggatgaaaattcaaatgtttaatatatatttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatag 382  Q
    |||||||| ||||| ||||||| |||||||    ||||||||||||| ||  ||||||||||| ||||| || ||||| |||||| ||||||| |||  |    
T  22129123 aattaggacgaaaagtcaaatgattaatat----ttgcaggggcaaattggaaggattagtaacttcagtgacgaaaattcaaatagcctatatttacgg 22129028  T
Q  383 ggatgaaa 390  Q
    ||||||||    
T  22129027 ggatgaaa 22129020  T

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Target: scaffold0182 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 14390 - 14481
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcctata 408  Q
    ||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||    
T  14390 ttgcaggggtaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaggggtgaaaagcatatttaagcctata 14481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 13221 - 13133
Alignment:
Q  318 ttgcaggggcaaaatgagaggattagtaagttcag-gatgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcct 405  Q
    |||||||||||||||| |||||||| |||  |||| ||||||||||||||||| ||||| ||| |||||||||| | ||||||||||||    
T  13221 ttgcaggggcaaaatgggaggattactaaactcagagatgaaaaatcaaatggtctatatttacagggatgaaaagcatatttaagcct 13133  T

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Target: scaffold0347 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 13692 - 13609
Alignment:
Q  322 aggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  13692 aggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcc 13609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 14610 - 14691
Alignment:
Q  322 aggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaag 402  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  14610 aggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattgaaggaatgaaatgcatatttaag 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 73193 - 73109
Alignment:
Q  321 caggggcaaaatgagaggattagtaagttcagg-atgaaaaatcaaatggcctataattatagggatgaaatgtatatttaagcc 404  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| |||||||||| ||||||| |||||||||| | |||||||||||    
T  73193 caggggcaaaatgggaggattagtaagctcagggatgaaaagtcaaatggcccataattacagggatgaaaagcatatttaagcc 73109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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