View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2557_low_8 (Length: 505)

Name: NF2557_low_8
Description: NF2557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2557_low_8
NF2557_low_8
[»] chr4 (4 HSPs)
chr4 (60-490)||(42677084-42677514)
chr4 (208-299)||(52835029-52835123)
chr4 (10-43)||(42677520-42677553)
chr4 (307-349)||(52834967-52835009)
[»] chr1 (5 HSPs)
chr1 (166-252)||(48968805-48968887)
chr1 (303-349)||(48969535-48969581)
chr1 (354-426)||(48969712-48969784)
chr1 (10-43)||(15496097-15496130)
chr1 (263-299)||(48968994-48969030)
[»] chr2 (3 HSPs)
chr2 (10-43)||(6705719-6705752)
chr2 (10-43)||(40900403-40900436)
chr2 (71-119)||(40900464-40900512)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 60 - 490
Target Start/End: Complemental strand, 42677514 - 42677084
Alignment:
Q  60 ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcataatagaatcggtacaaacacttaaaaaacaaac 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42677514 ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcacaatagaatcggtacaaacacttaaaaaacaaac 42677415  T
Q  160 atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaattttgctacct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42677414 atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcaaaaagcaaataattgtgcatagtatcggcaacaattttgctacct 42677315  T
Q  260 caggattcaaattctacgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagcttccgccatct 359  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42677314 caggattcaaattctatgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagctttcgccatct 42677215  T
Q  360 ccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggtttgcggctaggaccagcttccaacgacaaaaaatc 459  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42677214 ccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaagtattctccaatggtttgcgactaggaccagcttccaacgacaaaaaatc 42677115  T
Q  460 agcaccatgctcaaatggaaaaaattaaatg 490  Q
    ||||||||||||||||||| | |||||||||    
T  42677114 agcaccatgctcaaatggatagaattaaatg 42677084  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 52835123 - 52835029
Alignment:
Q  208 gtgttcacaaagcaaataattgtgcatagtatcggcaacaa-ttttgctacctcag--gattcaaattctacgaaccaaaaatgtcttgattttc 299  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||| ||| | |||||||||||||||||    
T  52835123 gtgttcaaagagcaaataattgtgcatagtatcagcaacaatttttgctacctcaggagattcaaattctatgaagccaaaatgtcttgattttc 52835029  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 42677553 - 42677520
Alignment:
Q  10 acatcatcaccacaaacaaaactcaccgtcacat 43  Q
    ||||||||||||||||||||||||||||||||||    
T  42677553 acatcatcaccacaaacaaaactcaccgtcacat 42677520  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 52835009 - 52834967
Alignment:
Q  307 aattctcaatctcttgatggttccaaattgtccaaaataagct 349  Q
    ||||||||||||||||| ||| || ||||||||||||||||||    
T  52835009 aattctcaatctcttgacggtaccgaattgtccaaaataagct 52834967  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 48968805 - 48968887
Alignment:
Q  166 tgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaatttt 252  Q
    ||||||||||||||||||||||| ||||| |||||||     ||||||| ||||||||||||||||||||||||| |||||||||||    
T  48968805 tgaacatgttctgaaggtaccacaaaaacctgtagtag----gtgttcaaaaagcaaataattgtgcatagtatcagcaacaatttt 48968887  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 48969535 - 48969581
Alignment:
Q  303 tggaaattctcaatctcttgatggttccaaattgtccaaaataagct 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48969535 tggaaattctcaatctcttgatggttccaaattgtccaaaataagct 48969581  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 48969712 - 48969784
Alignment:
Q  354 ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggttt 426  Q
    |||||||| |||| | ||||||||||||||||   ||||||||||||||| |||||| |||||||||| ||||    
T  48969712 ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaagaattctccaattgttt 48969784  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 15496097 - 15496130
Alignment:
Q  10 acatcatcaccacaaacaaaactcaccgtcacat 43  Q
    |||||||||||||||||||||||||||| |||||    
T  15496097 acatcatcaccacaaacaaaactcaccgccacat 15496130  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 48968994 - 48969030
Alignment:
Q  263 gattcaaattctacgaaccaaaaatgtcttgattttc 299  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  48968994 gattcaaattctatgaacccaaaatgtcttgattttc 48969030  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 6705719 - 6705752
Alignment:
Q  10 acatcatcaccacaaacaaaactcaccgtcacat 43  Q
    |||||||||||||||||||||||||||| |||||    
T  6705719 acatcatcaccacaaacaaaactcaccgccacat 6705752  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 40900403 - 40900436
Alignment:
Q  10 acatcatcaccacaaacaaaactcaccgtcacat 43  Q
    |||||||||||||||||||||||||||| |||||    
T  40900403 acatcatcaccacaaacaaaactcaccgccacat 40900436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 40900464 - 40900512
Alignment:
Q  71 tgtatgaattaacctccccttacaatatttttcaattgatggctagcgt 119  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  40900464 tgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgt 40900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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