View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_high_15 (Length: 243)
Name: NF2558_high_15
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30619470 - 30619694
Alignment:
| Q |
1 |
tcacccatcactattgcttggttatttttggtaacatcactattgcttggttaatgccaaaagaccaacatgttccttaattcattgtgataatatatat |
100 |
Q |
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| T |
30619470 |
tcacccaccactattgcttggttatttttggtaacatcactattgcttggttaatgccaaaagaccaacatgttccttaattcattgtgataatatatat |
30619569 |
T |
|
| Q |
101 |
aaaaaggagcaaattaaaagagtaagtggaaattaactcactggaaaatttgttgtagtagttgttccccaatattttagtgctgccaaatcataggctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30619570 |
aaaaaggagcaaattaaaagagtaagtggaaattaactcactggaaaatttgttgtagtagttgttccccaatattttagtgctgccaaatcataggctc |
30619669 |
T |
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| Q |
201 |
tagctgccttttcttctttgtcata |
225 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
30619670 |
tagctgctttttcttctttgtcata |
30619694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 41964865 - 41964947
Alignment:
| Q |
143 |
ggaaaatttgttgtagtagttgttccccaatattttagtgctgccaaatcataggctctagctgccttttcttctttgtcata |
225 |
Q |
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| T |
41964865 |
ggaaagtttgtagtggtagatgtcccccagtattttagtgctgctaaatcataagccctagctgctttctcttctttgtcata |
41964947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 28588121 - 28588185
Alignment:
| Q |
161 |
gttgttccccaatattttagtgctgccaaatcataggctctagctgccttttcttctttgtcata |
225 |
Q |
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| T |
28588121 |
gttggtccccagtacttcagtgctgccaaatcataagccctagctgccttttcttccttgtcata |
28588185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 13682028 - 13682087
Alignment:
| Q |
167 |
ccccaatattttagtgctgccaaatcataggctctagctgccttttcttctttgtcatat |
226 |
Q |
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|||||||| ||||| || ||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
13682028 |
ccccaatactttagagcagccaaatcataggatcttgcggccttttcttctttgtcatat |
13682087 |
T |
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