View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2558_high_16 (Length: 227)
Name: NF2558_high_16
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_high_16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 52272872 - 52273098
Alignment:
| Q |
1 |
atactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272872 |
atactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcgg |
52272971 |
T |
|
| Q |
101 |
attcagcattttcaatcttattagttatctcttcactggggcgaggctcagaatcaatatccacatggaagccatcattgtcatgaaaagaaacattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272972 |
attcagcattttcaatcttattagttatctcttcactagggcgaggatcagaatcaatatccacatggaagccatcattgtcatgaaaagaaacattaga |
52273071 |
T |
|
| Q |
201 |
tctgaaacccaacccaagtatccatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52273072 |
tctgaaacccaacccaagtatccatta |
52273098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University