View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2558_high_7 (Length: 352)
Name: NF2558_high_7
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 22314322 - 22313997
Alignment:
| Q |
19 |
tctgtaacagaagcaatga--tttaagttaattattattatattttttgggtattttcaggcggtgcttgtggatatgggaacctatacagccaaggcta |
116 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22314322 |
tctgcaacagaagcaatgacctttaagttaattattattatattttttgggtattttcaggcggtgcttgtggatatgggaacctatacagccaaggcta |
22314223 |
T |
|
| Q |
117 |
tggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccacgttggtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22314222 |
tggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccacgttggtgt |
22314123 |
T |
|
| Q |
217 |
aaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagac |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22314122 |
aaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagac |
22314023 |
T |
|
| Q |
317 |
ctcactttgatcttgctatgcctatg |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
22314022 |
ctcactttgatcttgctatgcctatg |
22313997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 2867236 - 2867132
Alignment:
| Q |
82 |
gcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgtt |
181 |
Q |
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|||||||||||||| ||||| || |||||||| |||||| ||| ||||||||| | ||||| ||||||||||||||||| || |||||||| ||||||| |
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| T |
2867236 |
gcttgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggtgcatgtt |
2867137 |
T |
|
| Q |
182 |
ttgaa |
186 |
Q |
| |
|
|||| |
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|
| T |
2867136 |
atgaa |
2867132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 45506969 - 45506886
Alignment:
| Q |
244 |
actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat |
327 |
Q |
| |
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||||| ||||| ||||| || ||||| ||||| | |||| |||||||||||| ||||| || || |||||||||||||||||| |
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| T |
45506969 |
actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45506886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 45512429 - 45512346
Alignment:
| Q |
244 |
actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat |
327 |
Q |
| |
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||||| ||||| ||||| || ||||| ||||| | |||| |||||||||||| ||||| || || |||||||||||||||||| |
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|
| T |
45512429 |
actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45512346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 109 - 342
Target Start/End: Complemental strand, 41491240 - 41491007
Alignment:
| Q |
109 |
caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac |
208 |
Q |
| |
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||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||| | ||||||| | || | |
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| T |
41491240 |
caaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagc |
41491141 |
T |
|
| Q |
209 |
gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc |
308 |
Q |
| |
|
|||||| || |||| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||| |
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| T |
41491140 |
aatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccc |
41491041 |
T |
|
| Q |
309 |
acctagacctcactttgatcttgctatgcctatg |
342 |
Q |
| |
|
||| | ||||||||||||||||| ||||||||| |
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| T |
41491040 |
tcctcgtcctcactttgatcttgccatgcctatg |
41491007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 342
Target Start/End: Complemental strand, 34207928 - 34207657
Alignment:
| Q |
71 |
tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg |
170 |
Q |
| |
|
||||||| || || ||||| ||||| || || || || ||||| ||||| || |||||||||||| |||||||||||||||||||||| || || ||||| |
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| T |
34207928 |
tttcaggtggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttg |
34207829 |
T |
|
| Q |
171 |
tggagcatgttttgaactcaagtgtgatcaagatccacgttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaat |
270 |
Q |
| |
|
||| | |||||||| | |||||| | ||||| ||||||| ||||||||| || ||||| || | ||||| ||||| ||||| || |||||| |
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|
| T |
34207828 |
tggctcgtgttttgagttaaagtgttccaatgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaat |
34207729 |
T |
|
| Q |
271 |
tttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgatcttgctatgcctatg |
342 |
Q |
| |
|
||||||||| | ||||| ||||| || ||||| ||||| || |||| |||||||||||||||||||||||| |
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| T |
34207728 |
tttgctcaagcaagtgataatggaggttggtgtaaccctccacgaccacactttgatcttgctatgcctatg |
34207657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 18301646 - 18301543
Alignment:
| Q |
70 |
ttttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagtt |
169 |
Q |
| |
|
|||| ||| ||||| ||||||||||| ||||||||||| ||||| |||||| |||||| || || |||||||||| | ||||||| ||| ||||| | |
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|
| T |
18301646 |
tttttaggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagct |
18301547 |
T |
|
| Q |
170 |
gtgg |
173 |
Q |
| |
|
|||| |
|
|
| T |
18301546 |
gtgg |
18301543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 23858729 - 23858631
Alignment:
| Q |
244 |
actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgatcttgctatgcctatg |
342 |
Q |
| |
|
||||| || |||||||| ||||| |||||||||||| | ||||| |||||||| ||||| ||||| ||| | ||||| ||||||||||||||||||||| |
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|
| T |
23858729 |
actgctactaacttttgtcctcctaattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattttgatcttgctatgcctatg |
23858631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 31832000 - 31831909
Alignment:
| Q |
82 |
gcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgg |
173 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||| |||||| || || | || |||||||| ||||||||||||||||| ||||| |
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|
| T |
31832000 |
gcttgtggatatggtaacctttacagtcaagggtatggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtgg |
31831909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 23858870 - 23858788
Alignment:
| Q |
103 |
tacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttga |
185 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||| ||||||| || | ||||||||||| ||||| ||||| || |||||||| |
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|
| T |
23858870 |
tacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttga |
23858788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 11591406 - 11591506
Alignment:
| Q |
85 |
tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttg |
184 |
Q |
| |
|
||||||||||||||| | || |||||||| ||||| |||||||| || ||||||| || |||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
11591406 |
tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttg |
11591505 |
T |
|
| Q |
185 |
a |
185 |
Q |
| |
|
| |
|
|
| T |
11591506 |
a |
11591506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 27488876 - 27488787
Alignment:
| Q |
85 |
tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga |
174 |
Q |
| |
|
||||||||||| || |||| |||||||| |||||| |||||||||||||||||||| || | ||||||||||| ||||| |||||| |
|
|
| T |
27488876 |
tgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga |
27488787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 42965925 - 42966027
Alignment:
| Q |
71 |
tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg |
170 |
Q |
| |
|
||||||| || |||||||| ||||| || | || ||||||||||||||| ||||| || ||||||||||| || || ||||||||||| || ||||| |
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|
| T |
42965925 |
tttcaggaggggcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagttg |
42966024 |
T |
|
| Q |
171 |
tgg |
173 |
Q |
| |
|
||| |
|
|
| T |
42966025 |
tgg |
42966027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 27477651 - 27477562
Alignment:
| Q |
85 |
tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga |
174 |
Q |
| |
|
||||||||||| || | || |||||||| |||||| |||||||||||||||||||| || | ||||||||||| ||||| |||||| |
|
|
| T |
27477651 |
tgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga |
27477562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 3815005 - 3814897
Alignment:
| Q |
71 |
tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg |
170 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| | || || ||||| ||||| || ||||||||||| ||||| ||| ||||||||||||| || ||||| |
|
|
| T |
3815005 |
tttcaggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttg |
3814906 |
T |
|
| Q |
171 |
tggagcatg |
179 |
Q |
| |
|
||| ||||| |
|
|
| T |
3814905 |
tggtgcatg |
3814897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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