View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_high_8 (Length: 325)
Name: NF2558_high_8
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 54388600 - 54388318
Alignment:
| Q |
20 |
gagatgtattacgtagaagaaacaattagtgtattgagaatgagagcacattaagtgaagtcgtattcaaggattcaacctttttaaagtgatcaatcta |
119 |
Q |
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| T |
54388600 |
gagatgtattacgtagaagaaacaattagtgtattgagaatgagagcacattaagggaagtcgtattcaaagattcaacctttttaaagtgatcaatcta |
54388501 |
T |
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| Q |
120 |
tttagagtttaaagcgaataatatcagttattaatctataaatcaatagtttatatcatacaaaaatgcataactagttatattatcaaagaatcaaaac |
219 |
Q |
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| T |
54388500 |
tttagagtttaaagcgaataatatcagttattaatctataaatcaatagtttatatcatacaaaaatgcataactagttatattatcaaagaatcaaaac |
54388401 |
T |
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| Q |
220 |
acagtttgatgcacatatatttatgagatacgttaggaaaaaagtatacacagctgactatattaaataaaatatgcaccgag |
302 |
Q |
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| T |
54388400 |
acagtttgatgcacatagattaatgagatactttaggaaaaaaatatacacagctaactagattaaataaaatatgcaccgag |
54388318 |
T |
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