View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_1 (Length: 662)
Name: NF2558_low_1
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 5493595 - 5494149
Alignment:
| Q |
1 |
gtttcgttactttcttcatcggaatcttcttccgacgacatcgccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactctg |
100 |
Q |
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| T |
5493595 |
gtttcgttactttcttcatcggaatcttcttccgacgacatcgccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactccg |
5493694 |
T |
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| Q |
101 |
gactcggccgataccgatcggatcgcttaacggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttga |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5493695 |
gactcggacgataccgatcggatcgcttaacggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttga |
5493794 |
T |
|
| Q |
201 |
ccttctcgaaggttccacagttccaatgtagagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtg |
300 |
Q |
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| T |
5493795 |
ccttctcgaaggttccacagttccaatgtagagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtg |
5493894 |
T |
|
| Q |
301 |
gtattactcactagcttctgtgtatccgcggcgttttttgctctgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaa |
400 |
Q |
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| T |
5493895 |
gtagtactcactagcttctgtgtatccgcggcgttttttgctctgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaa |
5493994 |
T |
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| Q |
401 |
cggagattgctattgctactttctttgttccttttgcaggttgtgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctg |
500 |
Q |
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| T |
5493995 |
cggagattgctattgctactttctttgttccttttgcaggttgtgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctg |
5494094 |
T |
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| Q |
501 |
attcgacggtggtgcgtctggatattcatggaagaatggaatgttgtcggaggaa |
555 |
Q |
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| T |
5494095 |
attcgacggtggtgcgtctggatattcatggaagaatggaatgttgtcggaggaa |
5494149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 602 - 653
Target Start/End: Original strand, 5494196 - 5494247
Alignment:
| Q |
602 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494196 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg |
5494247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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