View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2558_low_10 (Length: 352)

Name: NF2558_low_10
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2558_low_10
NF2558_low_10
[»] chr7 (4 HSPs)
chr7 (19-342)||(22313997-22314322)
chr7 (82-186)||(2867132-2867236)
chr7 (244-327)||(45506886-45506969)
chr7 (244-327)||(45512346-45512429)
[»] chr2 (1 HSPs)
chr2 (109-342)||(41491007-41491240)
[»] chr5 (2 HSPs)
chr5 (71-342)||(34207657-34207928)
chr5 (70-173)||(18301543-18301646)
[»] chr4 (3 HSPs)
chr4 (244-342)||(23858631-23858729)
chr4 (82-173)||(31831909-31832000)
chr4 (103-185)||(23858788-23858870)
[»] chr3 (4 HSPs)
chr3 (85-185)||(11591406-11591506)
chr3 (85-174)||(27488787-27488876)
chr3 (71-173)||(42965925-42966027)
chr3 (85-174)||(27477562-27477651)
[»] chr6 (1 HSPs)
chr6 (71-179)||(3814897-3815005)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 22314322 - 22313997
Alignment:
Q  19 tctgtaacagaagcaatga--tttaagttaattattattatattttttgggtattttcaggcggtgcttgtggatatgggaacctatacagccaaggcta 116  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314322 tctgcaacagaagcaatgacctttaagttaattattattatattttttgggtattttcaggcggtgcttgtggatatgggaacctatacagccaaggcta 22314223  T
Q  117 tggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccacgttggtgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314222 tggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccacgttggtgt 22314123  T
Q  217 aaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314122 aaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagac 22314023  T
Q  317 ctcactttgatcttgctatgcctatg 342  Q
    ||||||||||||||||||||||||||    
T  22314022 ctcactttgatcttgctatgcctatg 22313997  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 2867236 - 2867132
Alignment:
Q  82 gcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgtt 181  Q
    |||||||||||||| ||||| || |||||||| ||||||  ||| ||||||||| | ||||| ||||||||||||||||| || |||||||| |||||||    
T  2867236 gcttgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggtgcatgtt 2867137  T
Q  182 ttgaa 186  Q
     ||||    
T  2867136 atgaa 2867132  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 45506969 - 45506886
Alignment:
Q  244 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat 327  Q
    ||||| ||||| ||||| || ||||| ||||| |  |||| |||||||||||| ||||| || || ||||||||||||||||||    
T  45506969 actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45506886  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 45512429 - 45512346
Alignment:
Q  244 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat 327  Q
    ||||| ||||| ||||| || ||||| ||||| |  |||| |||||||||||| ||||| || || ||||||||||||||||||    
T  45512429 actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45512346  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 109 - 342
Target Start/End: Complemental strand, 41491240 - 41491007
Alignment:
Q  109 caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac 208  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||||||  ||||||||||  | ||||||||| | |||||||   | ||    |    
T  41491240 caaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagc 41491141  T
Q  209 gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc 308  Q
      |||||| || |||| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||    
T  41491140 aatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccc 41491041  T
Q  309 acctagacctcactttgatcttgctatgcctatg 342  Q
     ||| | ||||||||||||||||| |||||||||    
T  41491040 tcctcgtcctcactttgatcttgccatgcctatg 41491007  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 342
Target Start/End: Complemental strand, 34207928 - 34207657
Alignment:
Q  71 tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg 170  Q
    ||||||| || || ||||| ||||| || || || || ||||| ||||| || |||||||||||| |||||||||||||||||||||| || || |||||    
T  34207928 tttcaggtggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttg 34207829  T
Q  171 tggagcatgttttgaactcaagtgtgatcaagatccacgttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaat 270  Q
    |||  | ||||||||  | ||||||    | |||||  |||||||  |||||||||  || ||||| ||  | ||||| ||||| ||||| || ||||||    
T  34207828 tggctcgtgttttgagttaaagtgttccaatgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaat 34207729  T
Q  271 tttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgatcttgctatgcctatg 342  Q
    ||||||||| | ||||| ||||| || ||||| ||||| ||  |||| ||||||||||||||||||||||||    
T  34207728 tttgctcaagcaagtgataatggaggttggtgtaaccctccacgaccacactttgatcttgctatgcctatg 34207657  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 18301646 - 18301543
Alignment:
Q  70 ttttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagtt 169  Q
    |||| ||| ||||| ||||||||||| ||||||||||| ||||| ||||||  |||||| || ||  ||||||||||  | ||||||| ||| ||||| |    
T  18301646 tttttaggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagct 18301547  T
Q  170 gtgg 173  Q
    ||||    
T  18301546 gtgg 18301543  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 23858729 - 23858631
Alignment:
Q  244 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgatcttgctatgcctatg 342  Q
    ||||| || |||||||| ||||| |||||||||||| | ||||| |||||||| ||||| ||||| ||| | ||||| |||||||||||||||||||||    
T  23858729 actgctactaacttttgtcctcctaattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattttgatcttgctatgcctatg 23858631  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 31832000 - 31831909
Alignment:
Q  82 gcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgg 173  Q
    |||||||||||||| ||||| ||||| ||||| ||||||  |||||| || ||  | || |||||||| ||||||||||||||||| |||||    
T  31832000 gcttgtggatatggtaacctttacagtcaagggtatggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtgg 31831909  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 23858870 - 23858788
Alignment:
Q  103 tacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttga 185  Q
    ||||| ||||| || ||||| |||||||||||| ||||||| ||  | ||||||||||| ||||| ||||| || ||||||||    
T  23858870 tacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttga 23858788  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 11591406 - 11591506
Alignment:
Q  85 tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttg 184  Q
    ||||||||||||||| | || |||||||| |||||    |||||||| ||  ||||||| || |||||||||| ||| ||||| ||||||||||||||||    
T  11591406 tgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttg 11591505  T
Q  185 a 185  Q
    |    
T  11591506 a 11591506  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 27488876 - 27488787
Alignment:
Q  85 tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga 174  Q
    ||||||||||| ||  |||| |||||||| ||||||   |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||    
T  27488876 tgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27488787  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 42965925 - 42966027
Alignment:
Q  71 tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg 170  Q
    ||||||| || |||||||| ||||| ||  | || |||||||||||||||   ||||| || ||||||||||| || || ||||||||||| || |||||    
T  42965925 tttcaggaggggcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagttg 42966024  T
Q  171 tgg 173  Q
    |||    
T  42966025 tgg 42966027  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 27477651 - 27477562
Alignment:
Q  85 tgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga 174  Q
    ||||||||||| ||  | || |||||||| ||||||   |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||    
T  27477651 tgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27477562  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 3815005 - 3814897
Alignment:
Q  71 tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg 170  Q
    ||||||| ||||| ||||||||||| ||| | || || ||||| |||||    || ||||||||||| ||||| ||| ||||||||||||| || |||||    
T  3815005 tttcaggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttg 3814906  T
Q  171 tggagcatg 179  Q
    ||| |||||    
T  3814905 tggtgcatg 3814897  T

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