View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_13 (Length: 270)
Name: NF2558_low_13
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 47503928 - 47504178
Alignment:
| Q |
1 |
tggattgaatagtctccacttttcattttatattttctttaccttttgtcctctccatttcatacgcatctttctccctcctcctactttcaaccaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47503928 |
tggattgaatagtctccacttttcattttatattttctttaccttttgtcctctccatttcatacgcatctttctccctcctcctactttcaaccaagat |
47504027 |
T |
|
| Q |
101 |
atcatcttccattctttctcttataaagaaccaaacccttagttcaactccaacaaccaccgatttaacaagaggcgagattgctggattgttcacttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47504028 |
atcatcttccattctttctcttataaagaaccaaacccttagttcaacttcaacaaccaccgatttaacaagaggcgagattgctggattgttcacttcc |
47504127 |
T |
|
| Q |
201 |
tgaaattaaacttttcatccaatttgtacatcagttcatccagtccaacac |
251 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47504128 |
tgaaattaaacttttcatccaatttgttcatcagttcatccagtccaacac |
47504178 |
T |
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