View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2558_low_14 (Length: 263)

Name: NF2558_low_14
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2558_low_14
NF2558_low_14
[»] chr8 (2 HSPs)
chr8 (7-246)||(15349135-15349374)
chr8 (109-199)||(4962191-4962281)
[»] chr4 (25 HSPs)
chr4 (7-243)||(48898995-48899231)
chr4 (7-204)||(45365790-45365987)
chr4 (7-201)||(48870857-48871051)
chr4 (7-201)||(48876161-48876355)
chr4 (7-201)||(48886543-48886737)
chr4 (66-197)||(7790381-7790512)
chr4 (93-199)||(7773481-7773587)
chr4 (67-137)||(48864396-48864466)
chr4 (14-137)||(45371651-45371774)
chr4 (66-149)||(48156058-48156141)
chr4 (76-149)||(7765991-7766064)
chr4 (76-197)||(7771696-7771817)
chr4 (76-137)||(45384531-45384592)
chr4 (66-147)||(49043797-49043878)
chr4 (76-148)||(7878733-7878805)
chr4 (77-137)||(49038518-49038578)
chr4 (82-137)||(48147358-48147413)
chr4 (76-146)||(48853033-48853103)
chr4 (109-194)||(7237415-7237500)
chr4 (76-149)||(7786813-7786886)
chr4 (76-137)||(7908663-7908724)
chr4 (106-139)||(48903314-48903347)
chr4 (64-147)||(50666666-50666749)
chr4 (76-137)||(7813838-7813899)
chr4 (106-146)||(48861640-48861680)
[»] chr3 (3 HSPs)
chr3 (7-203)||(47451470-47451666)
chr3 (80-137)||(11024146-11024203)
chr3 (92-137)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (93-203)||(9120058-9120168)
chr5 (76-137)||(42561972-42562033)
chr5 (106-157)||(179399-179450)
chr5 (76-137)||(29688490-29688551)
chr5 (79-137)||(29712083-29712141)
[»] chr1 (2 HSPs)
chr1 (93-137)||(24310577-24310621)
chr1 (77-144)||(24416132-24416199)
[»] chr7 (1 HSPs)
chr7 (76-146)||(48884176-48884246)
[»] chr6 (1 HSPs)
chr6 (106-134)||(21979297-21979325)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 15349374 - 15349135
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15349374 tccaataatatcaccactctttgtacggcacaaagggtaaaagtacagagttggatcatcatcaatattaagaacaagaatctttgtccaagaagagttc 15349275  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349274 actttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcac 15349175  T
Q  207 cagcatcatgttcaaaatcatctggatgaggcatctcaaa 246  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  15349174 cagcatcatgttcaaaatcatctggaggaggcatctcaaa 15349135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  109 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaacca 199  Q
    ||||||||||||||||||||||||||||| ||||  |||  |||||||| |   ||| ||||| | |||||| ||||| ||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 48899231 - 48898995
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||  ||||| ||||||| |||||| ||||||||||||| ||| ||| |  ||||||||  |||||||||| ||  ||||||||| || ||     
T  48899231 tccaataatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggatttt 48899132  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcac 206  Q
    ||||| ||||||||||||||||||||||||| | ||||||||| |||||  | || ||| | ||| ||||| || |||||||||||||||||||||||      
T  48899131 actttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcct 48899032  T
Q  207 cagcatcatgttcaaaatcatctggatgaggcatctc 243  Q
     || |  |||||| |||||||||||| ||| ||||||    
T  48899031 gaggaatatgttccaaatcatctggaggagacatctc 48898995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 45365790 - 45365987
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| ||||||||| || ||||||  ||| |||||| |||||||  |||| ||| |  ||||||||  ||||||  || ||||||||||||| ||   |    
T  45365790 tccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgc 45365889  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatc 204  Q
    ||||| ||||||||||||||||||||||||| | ||||||||  ||||||| ||| ||||| ||| |||||||| ||||| |||||||||||||||||    
T  45365890 actttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 48871051 - 48870857
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |  |||||||||| ||||||||||||| ||||||    
T  48871051 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48870952  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccaca 201  Q
    ||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |||||| ||||| ||||||||||||||    
T  48870951 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 48876355 - 48876161
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |  |||||||||| ||||||||||||| ||||||    
T  48876355 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48876256  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccaca 201  Q
    ||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |||||| ||||| ||||||||||||||    
T  48876255 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 48886737 - 48886543
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |  |||||||||| ||||||||||||| ||||||    
T  48886737 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48886638  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccaca 201  Q
    ||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |||||| ||||| ||||||||||||||    
T  48886637 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 7790512 - 7790381
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagacca 165  Q
    ||||||||  |||||||||| | || |||||||| || | |||||||||||||||||||||||||||||||| | ||||||||  ||||||| |||  ||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgca 7790413  T
Q  166 aagactaaaaaattcgccaaagacccacaaac 197  Q
     | ||| | |||||| ||||| ||||||||||    
T  7790412 taaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 7773481 - 7773587
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 192  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| || |||| ||| ||| | ||||| | |||| ||||| |||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  193 caaacca 199  Q
    |||||||    
T  7773581 caaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 48864466 - 48864396
Alignment:
Q  67 atcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||  ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 45371651 - 45371774
Alignment:
Q  14 atatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgt 113  Q
    |||||||| || |||||||  ||||| ||| |||||||| ||||||||    |||| |||  |||||||| | |||| |||||||| || | ||||||||    
T  45371651 atatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgt 45371750  T
Q  114 attctttcatcacccatatttcaa 137  Q
    |||||||||| |||||||||||||    
T  45371751 attctttcataacccatatttcaa 45371774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 48156058 - 48156141
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    ||||||||  ||| |||||| | || ||||||||||| | |||||||||||| ||||||||||||||||||| ||| |||||||    
T  48156058 catcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattag 48156141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 7766064 - 7765991
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    |||||||||  |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattag 7765991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 7771817 - 7771696
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 175  Q
    |||||||||| | || ||||| || || | |||||||||||||||||||||||||||| ||| | ||||||||  ||||||| |||  || | ||| | |    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgaga 7771718  T
Q  176 aattcgccaaagacccacaaac 197  Q
    ||||| ||||| ||||||||||    
T  7771717 aattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 45384531 - 45384592
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||| || ||||||||||||| || | |||||| |||||||||||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 49043797 - 49043878
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 147  Q
    ||||||||  || ||||||| |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||    
T  49043797 catcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 7878805 - 7878733
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatta 148  Q
    |||||||||| | ||  ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcatta 7878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 49038518 - 49038578
Alignment:
Q  77 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||| |||| |||||||| || |  |||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  82 aagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48853103 - 48853033
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| ||||||||||||| | ||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 7237415 - 7237500
Alignment:
Q  109 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccaca 194  Q
    ||||||||||||||||||||||||| ||| | ||||||||  |||||||  || ||| ||||| | |||||| ||||| |||||||    
T  7237415 tttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 7786886 - 7786813
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    |||||||||| ||||  |||||||  | | ||| |||||||||||||||||||||||||||| | |||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||||||||||||||||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 48903347 - 48903314
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  48903347 cactttgtattctttcatcacccatatttcaaat 48903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 50666749 - 50666666
Alignment:
Q  64 atcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 147  Q
    ||||||||| | || ||||||| | || |||||||| || | |||||||||||||| ||||||||||| ||||| | |||||||    
T  50666749 atcatcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcatt 50666666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||| ||||||||||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 48861680 - 48861640
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  48861680 cactttgtattcttttattacccatatttcaaatgtatcat 48861640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 47451470 - 47451666
Alignment:
Q  7 tccaagaatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttc 106  Q
    ||||| |||||||||||| ||||||  |   || |||||||||||| |||  ||| |  ||||||||  |||||||||| |||||  |||||| || ||     
T  47451470 tccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaatta 47451569  T
Q  107 actttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaat 203  Q
    ||||||||||||||||||||||||||||||| | |||||||| || |||||  |  ||  ||||||| |||||| ||||| ||||||||||||||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaat 47451666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  80 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 11005583 - 11005628
Alignment:
Q  92 gtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||| || | |||||||||||||||||| |||||||||||||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 9120168 - 9120058
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 192  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||| ||| | ||| | |||||| ||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  193 caaaccacaat 203  Q
    || | ||||||    
T  9120068 cacatcacaat 9120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 42561972 - 42562033
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 42562033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 179450 - 179399
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaatctatcattaggataatcc 157  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatcc 179399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 29688551 - 29688490
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||| ||| ||||||||||||| || | ||| ||||||| ||||||||||||||||||||    
T  29688551 aagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 29712083 - 29712141
Alignment:
Q  79 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||| |||| |||||||||||  |||| ||||||| || |||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 24310621 - 24310577
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||    
T  24310621 tccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  77 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatc 144  Q
    ||||||||| | || |||||||| || | | ||||||||||||||||||||||||| |||| ||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    |||||||||| |||| ||||||||    | |||||||||||||||||||||| ||||||||| | ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 21979297 - 21979325
Alignment:
Q  106 cactttgtattctttcatcacccatattt 134  Q
    |||||||||||||||||||||||||||||    
T  21979297 cactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University