View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_17 (Length: 247)
Name: NF2558_low_17
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49270555 - 49270316
Alignment:
| Q |
1 |
ctactgcaaaacttcctgtcttccttgaaatatcctttcccgtgccttgattgcctgcaatcagacattccagaaattattatatttcaataaacagtac |
100 |
Q |
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| T |
49270555 |
ctactgcaaaacttcctgtcttccttgaaatatcctttcccgtgccttgattgcctgcaatcagacattccagaaattattatatttcaataaacagtac |
49270456 |
T |
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| Q |
101 |
atgttcaaaactgttacagaatcataataagatagcatggcctaagatgttagttctctttgagtatgaacataattatcttctcaagtttaacataata |
200 |
Q |
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| T |
49270455 |
atgttcaaaactgttacagaatcataataagatagcaaggcctaagatgttagttctgtttgagtatgaacataattatcttctcaagtttaacataata |
49270356 |
T |
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| Q |
201 |
atgtgaaaatatttagcttgacaggatttcttgatctgtg |
240 |
Q |
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| T |
49270355 |
atgtgaaaatatttagcttgacaggatttcttgatctgtg |
49270316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 49257551 - 49257337
Alignment:
| Q |
24 |
cttgaaatatcctttcccgtgccttgattgcctgcaatca--gacattccagaaattattatatttcaataaacagtacatgttcaaaactgttacagaa |
121 |
Q |
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| T |
49257551 |
cttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaa |
49257452 |
T |
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| Q |
122 |
tcataataagatagcatggcctaagatgttagttctctttgagtatgaacataattatcttctcaagtttaacataataatgtgaaaatatttagcttga |
221 |
Q |
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| T |
49257451 |
tcttaataagatagcatggcctaagatgctagttctc--tgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttga |
49257354 |
T |
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| Q |
222 |
caggatttcttgatctg |
238 |
Q |
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| T |
49257353 |
cagaatttcttgatctg |
49257337 |
T |
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