View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_2 (Length: 570)
Name: NF2558_low_2
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 40172920 - 40173458
Alignment:
| Q |
18 |
ttgtggaggtaaactatggtgggtgatggactgccggggtgatagatttattccaggggatttgttcttctcaatgtgcnnnnnnnncc-agaattattt |
116 |
Q |
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| T |
40172920 |
ttgtggaggtaaattatggtgggtgacggactgccggggtgatagatttattccaggggatttgttcttctcaatgtgctacttttttttagaattattt |
40173019 |
T |
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| Q |
117 |
atataatttattatatgtattgttatatcctgattagcgggact--atgtttcattcaaaaacttgttttgacaatgttattttaaatattttgttgtgt |
214 |
Q |
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| T |
40173020 |
atataatttatca-atgtattgttatatcctgattggcgggactttatgtttcattcaaaaactcgttttgacaatgttattttaaatattttgttgtgt |
40173118 |
T |
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| Q |
215 |
cggttattgagggatttaaatactcatgttaggagaggtaaagatgccatagcaatggaagtaggattcattgttatttgtataggattcagtgaacttg |
314 |
Q |
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| T |
40173119 |
cggttattgagagatttaaatactcatgttaggagaggtaaagatgccatagcaatggaagtaggattcattgttatttgtataggattcagtgaacttg |
40173218 |
T |
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| Q |
315 |
cnnnnnnnnnnnnnnnactcatgagggaaaaccagaagaacagtatccttcattgagtttcctttcaaatggttttcacttaatttctctctccattgta |
414 |
Q |
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| T |
40173219 |
cttttttctcttttttcctcatgagggaacaccagaagaattgtatccttcattaagtttcttttcaaatggttttcacttaatttctctctccattgta |
40173318 |
T |
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| Q |
415 |
ggttgctgacgagtacagacttctacctgatacactatttttggcagttaactaccttgatcgctatctttcaggcaaagcaatgaacacacagcagtta |
514 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40173319 |
ggttgctgacgagtacagactcctacctgatacactatttttggcagttaactaccttgatcgctatctttcaggcaaagcaatgaacacgcagcagtta |
40173418 |
T |
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| Q |
515 |
caactgcttggtgttacctgcatgatgattgctgcgtagg |
554 |
Q |
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| T |
40173419 |
caactacttggtgttacctgcatgatgattgctgcgtagg |
40173458 |
T |
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