View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_23 (Length: 218)
Name: NF2558_low_23
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 24555046 - 24554831
Alignment:
| Q |
1 |
gattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggta |
100 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
24555046 |
gattcagcacaatctggcttgttaatgaactcgatctcaagatcggtaccggtaacgatgttactagtgctgttttctagtatggtgaatttaactggta |
24554947 |
T |
|
| Q |
101 |
aaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaactttgtctagggttagtcctccactgctagggttatcacttgctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24554946 |
aaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaactttgtctagggttagtcctccactgctagggttatcacttgctgg |
24554847 |
T |
|
| Q |
201 |
taaaatgtagtattgg |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
24554846 |
taaaatgtagtattgg |
24554831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 2930653 - 2930438
Alignment:
| Q |
3 |
ttcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggtaaa |
102 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
2930653 |
ttcagcacaatcagcctttttagtgaactcgatctcaagatcggtaccggtcaagatattaccagtgctgttttctgggatggtgaatttaactggtaaa |
2930554 |
T |
|
| Q |
103 |
ccagttacagcattattttgtaggacagttagtggacacactgaatcaccaactttgtctagggttagtcctccactgctagggttatcacttgctggta |
202 |
Q |
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| T |
2930553 |
cctatcatagcattattttgtaggacagttactggacactctaaattaccaactttgtttagggttagtcctccactgttagggttttcactagctggaa |
2930454 |
T |
|
| Q |
203 |
aaatgtagtattggct |
218 |
Q |
| |
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|||||||||||||||| |
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| T |
2930453 |
aaatgtagtattggct |
2930438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2917067 - 2916850
Alignment:
| Q |
1 |
gattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |||||||| ||| ||||||| | | ||||||||||||||||| |
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| T |
2917067 |
gattcagcacaatcaggcttcttagtaaactcaatctcaagatcggtaccagtcaagatattaccggtgttgttttctgggacggtgaatttaactggta |
2916968 |
T |
|
| Q |
101 |
aaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaactttgtctagggttagtcctccactgctagggttatcacttgctgg |
200 |
Q |
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|||| | | ||||||||||||||||||||||| |||||| || ||||||||||||||| || |||||||||||||||| ||||||| ||||| ||||| |
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| T |
2916967 |
aacctatcatagcattattttgtaggacagttactggacattctaaatcaccaactttgtttaaggttagtcctccactgttagggttttcactagctgg |
2916868 |
T |
|
| Q |
201 |
taaaatgtagtattggct |
218 |
Q |
| |
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||||||||||||||||| |
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| T |
2916867 |
aaaaatgtagtattggct |
2916850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24566749 - 24566533
Alignment:
| Q |
1 |
gattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggta |
100 |
Q |
| |
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|||| ||| |||||||||||| |||||||||| ||||||||||| ||||| | | ||||||||||||||| ||||| | ||| ||||||||||||||| |
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| T |
24566749 |
gatttagcgcaatcaggcttcgtagtgaactcaatctcaagatcagtacctggcaagatattactagtgctattttctaacatgctgaatttaactggta |
24566650 |
T |
|
| Q |
101 |
aaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaactttgtctagggttagtcctccactgctagggttatcacttgctgg |
200 |
Q |
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|||| |||||| | ||| ||||| ||| |||| ||||||| || ||||| ||| ||||| |||| ||||||||||| | ||||||||||||||| |||| |
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| T |
24566649 |
aacctattacagtaatatcttgtacgacggttactggacactctaaatcatcaattttgtttaggattagtcctccaatactagggttatcactttctgg |
24566550 |
T |
|
| Q |
201 |
taaaatgtagtattggc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
24566549 |
taaaatgtagtattggc |
24566533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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