View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_4 (Length: 520)
Name: NF2558_low_4
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 230 - 438
Target Start/End: Original strand, 52273355 - 52273563
Alignment:
| Q |
230 |
ccgcgaagaagtctctgagactcagctcgaagctgtttgagattttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaa |
329 |
Q |
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| T |
52273355 |
ccgcgaagaagtctctgagactcagctcgaagctgtttgagattttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaa |
52273454 |
T |
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| Q |
330 |
ttgtataaaaagaattcactggaaaacgcatacaaaccttctcggcttttcttttattggagatagattctttaagcttcttctcactgccgttatcgtc |
429 |
Q |
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| T |
52273455 |
ttgtataaaaataattcactggaaaacgcatacaaaccttctcggcttttcttttattggagatagattctttaagcttcttctcactgccgttatcgtc |
52273554 |
T |
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| Q |
430 |
gtcactgcc |
438 |
Q |
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||||||||| |
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| T |
52273555 |
gtcactgcc |
52273563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 52273145 - 52273304
Alignment:
| Q |
13 |
aaaatattgatgtaaacccacttacttctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273145 |
aaaatattgatgtaaacccacttacttctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaaca |
52273244 |
T |
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| Q |
113 |
ggtttaaatgcagcatctcttgtttctaaacaaaacacattaaactatgtgagttattgg |
172 |
Q |
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| T |
52273245 |
ggtttaaatgcagcatctcttgtttctaaacaaaacacattaaactatgtgagttattgg |
52273304 |
T |
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