View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2558_low_5 (Length: 517)

Name: NF2558_low_5
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2558_low_5
NF2558_low_5
[»] chr8 (14 HSPs)
chr8 (10-500)||(4875473-4875960)
chr8 (13-131)||(4913798-4913916)
chr8 (13-134)||(4904672-4904793)
chr8 (21-119)||(4925273-4925368)
chr8 (33-134)||(4776872-4776970)
chr8 (13-134)||(4890250-4890368)
chr8 (13-134)||(4995993-4996114)
chr8 (33-118)||(4736439-4736524)
chr8 (467-500)||(4714328-4714361)
chr8 (468-500)||(4736235-4736267)
chr8 (467-500)||(4702992-4703025)
chr8 (467-500)||(4725760-4725793)
chr8 (467-500)||(10446246-10446279)
chr8 (100-132)||(4681067-4681099)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Original strand, 4875473 - 4875960
Alignment:
Q  10 ataattctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatct 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875473 ataattctgatctagatcatcactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatct 4875572  T
Q  110 ttgtacctgttgtttatacatgaccnnnnnnnttgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagtt 209  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875573 ttgtacctgttgtttatacatgaccaaaaaaattgtcaataataagacattgatgttactccctccatccttaataataaacacacattgagaaaaagtt 4875672  T
Q  210 ttattcgtacatattagcccttatacaaattactagatgaatctagnnnnnnnnnctttctaaacaaacctgtaattaatactactgaccttgtcttaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||| |||||||    
T  4875673 ttattcgtacatattagcccttatacaaattactagatgaatctagttttttt---tttctaaacaaacctgtaattaatactactgaccttctcttaaa 4875769  T
Q  310 atatatatgaatattaatgtgctgctacgtacatactagctagctgactccatgcaatgtattcttcttacctgtaacctttgcctgtggtggaacctat 409  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4875770 atatatatgaatattaatgtcctgctacgtacatactagctagctgactccatgcaatgtattcttcttacctgcaacctttgcctgtggtggaacctat 4875869  T
Q  410 atcgaatctctccacgagtgataatggtgaagctgagtacgtggtatgatcattagaattgttcaaagtcctcaattctataactgaaatg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4875870 atcgaatctctccacgagtgataatggtgaagctgagtacgtgggatgatcattagaattgttcaaagtcctcaattctataactgaaatg 4875960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 4913798 - 4913916
Alignment:
Q  13 attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg 112  Q
    |||||||  |||||||||  |||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||| || || |||| |||||||||||||    
T  4913798 attctgaaatagatcattgatgttaaatgaggtggttaattgtctccaatcactggataattcacaaggcgaccagatgcggtcataaacatcatctttg 4913897  T
Q  113 tacctgttgtttatacatg 131  Q
    |||||||||||| ||||||    
T  4913898 tacctgttgtttgtacatg 4913916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 4904672 - 4904793
Alignment:
Q  13 attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg 112  Q
    ||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| ||||  |||| || || |||| |||||||||||||    
T  4904672 attctgatctagatcatcattgttaagtgagatgattaatcgtctcgaatcactggataattcacaaggaaaccagatgcggtcataaacatcatctttg 4904771  T
Q  113 tacctgttgtttatacatgacc 134  Q
    ||||| |||||| |||||||||    
T  4904772 tacctattgtttgtacatgacc 4904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 4925273 - 4925368
Alignment:
Q  21 ctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctgt 119  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||   | |||||||||||||||| || || |||| ||||||||||||||||||||    
T  4925273 ctagagcattattgttaagtgaggtgcttaatcgtctccaatcact---tgattcataaggcgaccagatgcggtcataaacatcatctttgtacctgt 4925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 4776872 - 4776970
Alignment:
Q  33 tgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctgttgtttatacatga 132  Q
    |||||||||||||||||||||||||||||||| |   ||| |||||||   ||||||| || |||| ||||||||||||||||||||||||| |||||||    
T  4776872 tgttaagtgaggtgcttaatcgtctccaatcaat---taactcataagaaaaccacatgcggtcataaacatcatctttgtacctgttgtttgtacatga 4776968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 4890250 - 4890368
Alignment:
Q  13 attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg 112  Q
    ||||||| ||||||||| | |||||||||||||||||||||||  ||||||| ||   ||| | |||||  |||| || || |||  |||||||||||||    
T  4890250 attctgaactagatcatcattgttaagtgaggtgcttaatcgtgcccaatcaatg---aatccgtaaggaaaccagatgcggtcaaaaacatcatctttg 4890346  T
Q  113 tacctgttgtttatacatgacc 134  Q
    |||||||||||| |||||||||    
T  4890347 tacctgttgtttgtacatgacc 4890368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 4996114 - 4995993
Alignment:
Q  13 attctgatctagatcattactgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttg 112  Q
    |||||||| ||||||||  |||||||||||| ||||||||  |  |||| |||||||||||| | | ||  |||| || || || | |||||||||||||    
T  4996114 attctgatgtagatcatcgctgttaagtgagctgcttaattttgcccaaccactggataatttaaagggaaaccagattcggtcgtaaacatcatctttg 4996015  T
Q  113 tacctgttgtttatacatgacc 134  Q
    |||||||||||| |||||||||    
T  4996014 tacctgttgtttgtacatgacc 4995993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 4736524 - 4736439
Alignment:
Q  33 tgttaagtgaggtgcttaatcgtctccaatcactggataattcataaggcgaccacatacgatcatgaacatcatctttgtacctg 118  Q
    |||||||||||||||||| ||||||| ||||||||| ||| ||  ||||  |||| || || |||| |||||||||||||||||||    
T  4736524 tgttaagtgaggtgcttagtcgtctcaaatcactgggtaaatcccaaggaaaccagatgcggtcataaacatcatctttgtacctg 4736439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 4714361 - 4714328
Alignment:
Q  467 attgttcaaagtcctcaattctataactgaaatg 500  Q
    ||||||||||||||||||||||||||||||||||    
T  4714361 attgttcaaagtcctcaattctataactgaaatg 4714328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 4736267 - 4736235
Alignment:
Q  468 ttgttcaaagtcctcaattctataactgaaatg 500  Q
    |||||||||||||||||||||||||||||||||    
T  4736267 ttgttcaaagtcctcaattctataactgaaatg 4736235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 4703025 - 4702992
Alignment:
Q  467 attgttcaaagtcctcaattctataactgaaatg 500  Q
    ||||||||||||||||||||| ||||||||||||    
T  4703025 attgttcaaagtcctcaattcaataactgaaatg 4702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 4725793 - 4725760
Alignment:
Q  467 attgttcaaagtcctcaattctataactgaaatg 500  Q
    ||||||||||||||||||||||||| ||||||||    
T  4725793 attgttcaaagtcctcaattctatagctgaaatg 4725760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 10446279 - 10446246
Alignment:
Q  467 attgttcaaagtcctcaattctataactgaaatg 500  Q
    ||||||||||||||||||||||||| ||||||||    
T  10446279 attgttcaaagtcctcaattctatagctgaaatg 10446246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 4681099 - 4681067
Alignment:
Q  100 aacatcatctttgtacctgttgtttatacatga 132  Q
    ||||||||||||||||||||||||| |||||||    
T  4681099 aacatcatctttgtacctgttgtttgtacatga 4681067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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