View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2558_low_6 (Length: 466)
Name: NF2558_low_6
Description: NF2558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2558_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 37814869 - 37815309
Alignment:
| Q |
13 |
aaaatcaatgcaactcatcaacgccccttcacaaatctctctatcttccaacacaagaaaggttccaccttccgctcatagtacatgaatcttacctaga |
112 |
Q |
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| T |
37814869 |
aaaatcaatgcaactcatcaacgccccttcacaaatctctctatcttccaacagaagaaaggttccaccttccgctcatagtacatgaatcttacctaga |
37814968 |
T |
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| Q |
113 |
aaccatttccacgaggagaattataccttatcaaccaaatgctccctataggtaatcctcccgtaggagattagaccgtttcatgattttcagatcgacc |
212 |
Q |
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| T |
37814969 |
aaccatttccaagaggagaattataccttatcaaccaaatgctccctagaggtaatcctcccataggagattagaccgtttcatgattttcagatcgacc |
37815068 |
T |
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| Q |
213 |
acacaataatatgtcaaactaaagccgaacctaacgtagctcacttcccattaatagttctaaaacaaaaatacnnnnnnnnnnnnntattaatacaatt |
312 |
Q |
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| T |
37815069 |
acacaataatatgtcaaactaaagccgaacctaacgtagctcacttcccattaatagttctaaaacaaaaatacaaaaaaaaaaaaaaattaatacaatt |
37815168 |
T |
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| Q |
313 |
aatagtagaaaattttcataatttgcacagagcacctgaaatcttaaagatatgcttaatttaaaggattgtttatctctaagaataaagaaacaatggt |
412 |
Q |
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| T |
37815169 |
aatagtagaaaattttcataatttgcacagagcacctgaaatcttaaagatatgcttaatttaaaggattgtttatctctaagaataaagaaacaatggt |
37815268 |
T |
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| Q |
413 |
caatataacatgtacatagtatccaaattcatgttttatgt |
453 |
Q |
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| T |
37815269 |
caatataacatgtacatagtatccaaattcatgttttatgt |
37815309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 37808092 - 37808175
Alignment:
| Q |
371 |
atttaaaggattgtttatctctaagaataaagaaacaatggtcaatataacatgtacatagtatccaaattcatgttttatgtg |
454 |
Q |
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| T |
37808092 |
atttaaaggattatttatccctaaaaatgaagaaacaatgttcaatataatttgtacataatatccaaattcatgtattatgtg |
37808175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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